Evidence of Abundant Purifying Selection in Humans for Recently Acquired Regulatory Functions

by Ward, Lucas D., Kellis, Manolis
Published 2016

HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants

by Ward, Lucas D., Manolis, Kellis
Published 2012

Interpreting noncoding genetic variation in complex traits and human disease

by Kellis, Manolis, Ward, Lucas D.
Published 2014

HaploReg v4: systematic mining of putative causal variants, cell types, regulators and target genes for human complex traits and disease

by Ward, Lucas D., Kellis, Manolis
Published 2016

Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

by Ward, Lucas D., Kheradpour, Pouya, Iriarte, Benjamin, Kellis, Manolis
Published 2016

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

by Ward, Lucas D., Kheradpour, Pouya, Iriarte, Benjamin, Kamvysselis, Manolis
Published 2019

A High-Resolution Map of Human Evolutionary Constraint Using 29 Mammals

by Mag Washietl, Stefan, Kheradpour, Pouya, Ernst, Jason, Ward, Lucas D., Jungreis, Irwin, Rasmussen, Matthew D., Kellis, Manolis
Published 2012

An integrated encyclopedia of DNA elements in the human genome

by Altshuler, Robert Charles, Ernst, Jason, Kellis, Manolis, Kheradpour, Pouya, Ward, Lucas D., Eaton, Matthew Lucas, Hendrix, David A., Jungreis, Irwin, Lin, Michael F., Washietl, Stefan
Published 2014

Mapping and Analysis of Chromatin State Dynamics in Nine Human Cell Types

by Ernst, Jason, Kheradpour, Pouya, Mikkelsen, Tarjei Sigurd, Shoresh, Noam, Ward, Lucas D., Epstein, Charles B., Zhang, Xiaolan, Wang, Li, Issner, Robbyn, Coyne, Michael J., Ku, Manching, Durham, Timothy, Kellis, Manolis, Bernstein, Bradley E.
Published 2012

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

by Bernstein, Bradley E., Epstein, Charles B., Shoresh, Noam, Ernst, Jason, Mikkelsen, Tarjei Sigurd, Kheradpour, Pouya, Zhang, Xiaolan, Wang, Li, Issner, Robbyn, Coyne, Michael J., Durham, Timothy, Ku, Manching, Truong, Thanh, Ward, Lucas D., Altshuler, Robert Charles, Lin, Michael F., Kellis, Manolis, ENCODE Project Consortium
Published 2011

Common Genetic Variants Modulate Pathogen-Sensing Responses in Human Dendritic Cells

by Lee, M. N., Ye, C., Villani, A.-C, Raj, T., Li, W., Eisenhaure, Thomas, Imboywa, S. H., Chipendo, P. I., Slowikowski, K., Raddassi, K., McCabe, C., Lee, M. H., Frohlich, I. Y., Raychaudhuri, S., Stranger, B. E., Benoist, Christophe, De Jager, Philip L., Hacohen, Nir, Ran, F. Ann, Zhang, Feng, Regev, Aviv, Hafler, David A., Ward, Lucas D., Kellis, Manolis
Published 2015

Integrative analysis of 111 reference human epigenomes

by Kundaje, Anshul, Meuleman, Wouter, Ernst, Jason, Yen, Angela, Kheradpour, Pouya, Zhang, Zhizhuo, Wang, Jianrong, Ward, Lucas D., Sarkar, Abhishek Kulshreshtha, Quon, Gerald, Eaton, Matthew Lucas, Wu, Yi-Chieh, Pfenning, Andreas R., Wang, Xinchen, Claussnitzer, Melina, Liu, Yaping, Bansal, Mukul S., Kim, Ah Ram, Cowper Sal-lari, Richard, Sinnott-Armstrong, Nicholas A., Gjoneska, Elizabeta, Tsai, Li-Huei, Kellis, Manolis, Feizi- Khankandi, Soheil, Boyer, Laurie Ann
Published 2016

Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers

by Onengut-Gumuscu, Suna, Chen, Wei-Min, Burren, Oliver, Farber, Emily, Szpak, Michal, Schofield, Ellen, Achuthan, Premanand, Guo, Hui, Stevens, Helen, Kundaje, Anshul, Kellis, Manolis, Deloukas, Panos, Wallace, Chris, Concannon, Patrick, Cooper, Nick J., Quinlan, Aaron R., Mychaleckyj, Josyf C., Bonnie, Jessica K., Fortune, Mary D., Walker, Neil M., Ward, Lucas D., Daly, Mark J., Barrett, Jeffrey C., Cooper, Jason D., Todd, John A., Rich, Stephen S.
Published 2016

Defining functional DNA elements in the human genome

by Kellis, Manolis, Wold, Barbara, Snyder, Michael P., Bernstein, Bradley E., Kundaje, Anshul, Marinov, Georgi K., Ward, Lucas D., Birney, Ewan, Crawford, Gregory E., Dekker, Job, Dunham, Ian, Elnitski, Laura L., Farnham, Peggy J., Feingold, Elise A., Gerstein, Mark B., Giddings, Morgan C., Gilbert, David M., Gingeras, Thomas R., Green, Eric D., Guigo, Roderic, Hubbard, Tim, Kent, Jim, Lieb, Jason D., Myers, Richard M., Pazin, Michael J., Ren, Bing, Stamatoyannopoulos, John A., Weng, Zhiping, White, Kevin P., Hardison, Ross C.
Published 2014