Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer's disease

by Gjoneska, Elizabeta, Pfenning, Andreas R., Mathys, Hansruedi, Quon, Gerald, Kundaje, Anshul, Tsai, Li-Huei, Kellis, Manolis
Published 2016

High-throughput functional comparison of promoter and enhancer activities

by Nguyen, Thomas A., Jones, Richard D., Snavely, Andrew R., Pfenning, Andreas R., Kirchner, Rory, Hemberg, Martin, Gray, Jesse M.
Published 2017

Core and region-enriched networks of behaviorally regulated genes and the singing genome

by Whitney, Osceola, Pfenning, Andreas R., Howard, Jason T., Blatti, Charles A., Liu, Fang, Ward, James M., Wang, Rui, Audet, Jean-Nicolas, Kellis, Manolis, Mukherjee, Sayan, Sinha, Saurabh, Hartemink, Alexander J., West, Anne E., Jarvis, Erich D.
Published 2016

Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes

by Madabhushi, Ram, Pfenning, Andreas R., Gao, Fan, Pan, Ling, Yamakawa, Satoko, Seo, Jinsoo, Rueda IV, Richard, Phan, Trongha, Yamakawa, Hidekuni, Pao, Ping-Chieh, Stott, Ryan T, Gjoneska, Elizabeta, Nott, Alexander, Cho, Sukhee, Kellis, Manolis, Tsai, Li-Huei
Published 2017

Epigenome-wide study uncovers large-scale changes in histone acetylation driven by tau pathology in aging and Alzheimer's human brains

by Klein, Hans-Ulrich, McCabe, Cristin, Gjoneska, Elizabeta, Sullivan, Sarah E, Kaskow, Belinda J, Tang, Anna, Smith, Robert V, Xu, Jishu, Pfenning, Andreas R, Bernstein, Bradley E, Meissner, Alexander, Schneider, Julie A, Mostafavi, Sara, Tsai, Li-Huei, Young-Pearse, Tracy L, Bennett, David A, De Jager, Philip L
Published 2021

Integrative analysis of 111 reference human epigenomes

by Kundaje, Anshul, Meuleman, Wouter, Ernst, Jason, Yen, Angela, Kheradpour, Pouya, Zhang, Zhizhuo, Wang, Jianrong, Ward, Lucas D., Sarkar, Abhishek Kulshreshtha, Quon, Gerald, Eaton, Matthew Lucas, Wu, Yi-Chieh, Pfenning, Andreas R., Wang, Xinchen, Claussnitzer, Melina, Liu, Yaping, Bansal, Mukul S., Kim, Ah Ram, Cowper Sal-lari, Richard, Sinnott-Armstrong, Nicholas A., Gjoneska, Elizabeta, Tsai, Li-Huei, Kellis, Manolis, Feizi- Khankandi, Soheil, Boyer, Laurie Ann
Published 2016