Common Variants at 9p21 and 8q22 Are Associated with Increased Susceptibility to Optic Nerve Degeneration in Glaucoma

by Ernst, Jason, Kellis, Manolis
Published 2012

Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types

by Kellis, Manolis, Ernst, Jason
Published 2013

Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues

by Ernst, Jason, Kellis, Manolis
Published 2016

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

by Ernst, Jason, Kellis, Manolis
Published 2012

Discovery and characterization of chromatin states for systematic annotation of the human genome

by Ernst, Jason, Kellis, Manolis
Published 2012

Chromatin-state discovery and genome annotation with ChromHMM

by Ernst, Jason, Kellis, Manolis
Published 2020

ChromHMM: automating chromatin-state discovery and characterization

by Ernst, Jason, Kellis, Manolis
Published 2014

Evidence of reduced recombination rate in human regulatory domains

by Ernst, Jason, Liu, Yaping, Sarkar, Abhishek Kulshreshtha, Kheradpour, Pouya, Kellis, Manolis
Published 2017

Distinct and Predictive Histone Lysine Acetylation Patterns at Promoters, Enhancers, and Gene Bodies

by Rajagopal, Nisha, Kellis, Manolis, Ernst, Jason, Ray, Pradipta, Wu, Jie, Zhang, Michael, Ren, Bing
Published 2015

Genome-scale high-resolution mapping of activating and repressive nucleotides in regulatory regions

by Ernst, Jason, Melnikov, Alexandre, Zhang, Xiaolan, Wang, Li, Rogov, Peter L, Mikkelsen, Tarjei, Kellis, Manolis
Published 2017

IL-3 and Oncogenic Abl Regulate the Myeloblast Transcriptome by Alt= Stability

by Ernst, Jason, Ghanem, Louis, Bar-Joseph, Ziv, McNamara, Michael, Brown, Jason, Steinman, Richard A.
Published 2010

A High-Resolution Map of Human Evolutionary Constraint Using 29 Mammals

by Mag Washietl, Stefan, Kheradpour, Pouya, Ernst, Jason, Ward, Lucas D., Jungreis, Irwin, Rasmussen, Matthew D., Kellis, Manolis
Published 2012

Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay

by Kheradpour, Pouya, Kellis, Manolis, Ernst, Jason, Melnikov, Alexandre, Rogov, Peter, Wang, Li, Zhang, Xiaolan, Alston, Jessica, Mikkelsen, Tarjei Sigurd
Published 2013

Integrating and mining the chromatin landscape of cell-type specificity using self-organizing maps

by Kellis, Manolis, Mortazavi, Ali, Pepke, Shirley, Jansen, Camden, Marinov, Georgi K., Ernst, Jason, Hardison, Ross C., Myers, Richard M., Wold, Barbara J.
Published 2014

Linking DNA Methyltransferases to Epigenetic Marks and Nucleosome Structure Genome-wide in Human Tumor Cells

by Jin, Bilian, Ernst, Jason, Tiedemann, Rochelle L, Xu, Hongyan, Sureshchandra, Suhas, Kellis, Manolis, Dalton, Stephen, Liu, Chen, Choi, Jeong-Hyeon, Robertson, Keith D
Published 2014

An integrated encyclopedia of DNA elements in the human genome

by Altshuler, Robert Charles, Ernst, Jason, Kellis, Manolis, Kheradpour, Pouya, Ward, Lucas D., Eaton, Matthew Lucas, Hendrix, David A., Jungreis, Irwin, Lin, Michael F., Washietl, Stefan
Published 2014

Mapping and Analysis of Chromatin State Dynamics in Nine Human Cell Types

by Ernst, Jason, Kheradpour, Pouya, Mikkelsen, Tarjei Sigurd, Shoresh, Noam, Ward, Lucas D., Epstein, Charles B., Zhang, Xiaolan, Wang, Li, Issner, Robbyn, Coyne, Michael J., Ku, Manching, Durham, Timothy, Kellis, Manolis, Bernstein, Bradley E.
Published 2012

Integrative annotation of chromatin elements from ENCODE data

by Ernst, Jason, Kellis, Manolis, Hoffman, Michael M., Wilder, Steven P., Kundaje, Anshul, Harris, Robert S., Libbrecht, Max, Giardine, Belinda, Ellenbogen, Paul M., Bilmes, Jeffrey A., Birney, Ewan, Hardison, Ross C., Dunham, Ian, Noble, William Stafford
Published 2013