Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals

by Washietl, Stefan, Kellis, Manolis, Garber, Manuel
Published 2014

Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

by Rouskin, Silvi, Zubradt, Meghan, Washietl, Stefan, Kellis, Manolis, Weissman, Jonathan S.
Published 2016

RNA Folding with Soft Constraints: Reconciliation of Probing Data and Thermodynamic Secondary Structure Prediction

by Mag Washietl, Stefan, Hofacker, Ivo L., Stadler, Peter F., Kellis, Manolis
Published 2012

Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes

by Lin, Michael F., Kheradpour, Pouya, Mag Washietl, Stefan, Parker, Brian J., Pedersen, Jakob S., Kellis, Manolis
Published 2012

Computational analysis of noncoding RNAs

by Washietl, Stefan, Will, Sebastian, Hendrix, David A., Goff, Loyal, Rinn, John L., Berger, Bonnie, Kellis, Manolis
Published 2014

A High-Resolution Map of Human Evolutionary Constraint Using 29 Mammals

by Mag Washietl, Stefan, Kheradpour, Pouya, Ernst, Jason, Ward, Lucas D., Jungreis, Irwin, Rasmussen, Matthew D., Kellis, Manolis
Published 2012

New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes

by Kellis, Manolis, Parker, Brian J., Moltke, Ida, Roth, Adam, Washietl, Stefan, Wen, Jiayu, Breaker, Ronald, Pedersen, Jakob Skou
Published 2012

Optimization of parameters for coverage of low molecular weight proteins

by Muller, Stephan A., Kohajda, Tibor, Findeiß, Sven, Stadler, Peter F., Mag Washietl, Stefan, Kellis, Manolis, Bergen, Martin von, Kalkhof, Stefan
Published 2011

An integrated encyclopedia of DNA elements in the human genome

by Altshuler, Robert Charles, Ernst, Jason, Kellis, Manolis, Kheradpour, Pouya, Ward, Lucas D., Eaton, Matthew Lucas, Hendrix, David A., Jungreis, Irwin, Lin, Michael F., Washietl, Stefan
Published 2014

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

by Kheradpour, Pouya, Bristow, Christopher A., Mag Washietl, Stefan, Ay, Ferhat, Jungreis, Irwin, Marbach, Daniel, Sealfon, Rachel Sima, Will, Sebastian, Berger, Bonnie, Kellis, Manolis, Roy, Sushmita, Ernst, Jason, Lin, Michael F., Meyer, Patrick E., Di Stefano, Luisa, Candeias, Rogerio, Nordman, Jared T., Orr-Weaver, Terry L.
Published 2013