Estimating the Timing of Early Simian-Human Immunodeficiency Virus Infections: a Comparison between Poisson Fitter and BEAST

by Elena E. Giorgi, Hui Li, Tanmoy Bhattacharya, George M. Shaw, Bette Korber
Published 2020-03-01

Effect of epitope variant co-delivery on the depth of CD8 T cell responses induced by HIV-1 conserved mosaic vaccines

by Edmund G. Wee, Nathifa Moyo, Zara Hannoun, Elena E. Giorgi, Bette Korber, Tomáš Hanke
Published 2021-06-01

Mutations that confer resistance to broadly-neutralizing antibodies define HIV-1 variants of transmitting mothers from that of non-transmitting mothers.

by Amit Kumar, Elena E Giorgi, Joshua J Tu, David R Martinez, Joshua Eudailey, Michael Mengual, Manukumar Honnayakanahalli Marichannegowda, Russell Van Dyke, Feng Gao, Sallie R Permar
Published 2021-04-01

Association between mitochondrial genetic variation and breast cancer risk: The Multiethnic Cohort.

by Yuqing Li, Elena E Giorgi, Kenneth B Beckman, Christian Caberto, Remi Kazma, Annette Lum-Jones, Christopher A Haiman, Loïc Le Marchand, Daniel O Stram, Richa Saxena, Iona Cheng
Published 2019-01-01

Genital tract sequestration of SIV following acute infection.

by James B Whitney, Peter T Hraber, Corinne Luedemann, Elena E Giorgi, Marcus G Daniels, Tanmoy Bhattacharya, Srinivas S Rao, John R Mascola, Gary J Nabel, Bette T Korber, Norman L Letvin
Published 2011-02-01

Induction of Neutralizing Responses against Autologous Virus in Maternal HIV Vaccine Trials

by Eliza D. Hompe, Jesse F. Mangold, Amit Kumar, Joshua A. Eudailey, Erin McGuire, Barton F. Haynes, M. Anthony Moody, Peter F. Wright, Genevieve G. Fouda, Elena E. Giorgi, Feng Gao, Sallie R. Permar
Published 2020-06-01

Infant transmitted/founder HIV-1 viruses from peripartum transmission are neutralization resistant to paired maternal plasma.

by Amit Kumar, Claire E P Smith, Elena E Giorgi, Joshua Eudailey, David R Martinez, Karina Yusim, Ayooluwa O Douglas, Lisa Stamper, Erin McGuire, Celia C LaBranche, David C Montefiori, Genevieve G Fouda, Feng Gao, Sallie R Permar
Published 2018-04-01

Elucidation of hepatitis C virus transmission and early diversification by single genome sequencing.

by Hui Li, Mark B Stoddard, Shuyi Wang, Lily M Blair, Elena E Giorgi, Erica H Parrish, Gerald H Learn, Peter Hraber, Paul A Goepfert, Michael S Saag, Thomas N Denny, Barton F Haynes, Beatrice H Hahn, Ruy M Ribeiro, Alan S Perelson, Bette T Korber, Tanmoy Bhattacharya, George M Shaw
Published 2012-01-01

Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants

by Peter Hraber, Bette Korber, Kshitij Wagh, Elena E. Giorgi, Tanmoy Bhattacharya, S. Gnanakaran, Alan S. Lapedes, Gerald H. Learn, Edward F. Kreider, Yingying Li, George M. Shaw, Beatrice H. Hahn, David C. Montefiori, S. Munir Alam, Mattia Bonsignori, M. Anthony Moody, Hua-Xin Liao, Feng Gao, Barton F. Haynes
Published 2015-10-01

Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing.

by Will Fischer, Vitaly V Ganusov, Elena E Giorgi, Peter T Hraber, Brandon F Keele, Thomas Leitner, Cliff S Han, Cheryl D Gleasner, Lance Green, Chien-Chi Lo, Ambarish Nag, Timothy C Wallstrom, Shuyi Wang, Andrew J McMichael, Barton F Haynes, Beatrice H Hahn, Alan S Perelson, Persephone Borrow, George M Shaw, Tanmoy Bhattacharya, Bette T Korber
Published 2010-08-01

Maternal Broadly Neutralizing Antibodies Can Select for Neutralization-Resistant, Infant-Transmitted/Founder HIV Variants

by David R. Martinez, Joshua J. Tu, Amit Kumar, Jesse F. Mangold, Riley J. Mangan, Ria Goswami, Elena E. Giorgi, Juilin Chen, Michael Mengual, Ayooluwa O. Douglas, Holly Heimsath, Kevin O. Saunders, Nathan I. Nicely, Joshua Eudailey, Giovanna Hernandez, Papa Kwadwo Morgan-Asiedu, Kevin Wiehe, Barton F. Haynes, M. Anthony Moody, Celia LaBranche, David C. Montefiori, Feng Gao, Sallie R. Permar
Published 2020-03-01

High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men.

by Hui Li, Katharine J Bar, Shuyi Wang, Julie M Decker, Yalu Chen, Chuanxi Sun, Jesus F Salazar-Gonzalez, Maria G Salazar, Gerald H Learn, Charity J Morgan, Joseph E Schumacher, Peter Hraber, Elena E Giorgi, Tanmoy Bhattacharya, Bette T Korber, Alan S Perelson, Joseph J Eron, Myron S Cohen, Charles B Hicks, Barton F Haynes, Martin Markowitz, Brandon F Keele, Beatrice H Hahn, George M Shaw
Published 2010-05-01

Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection

by Hongshuo Song, Elena E. Giorgi, Vitaly V. Ganusov, Fangping Cai, Gayathri Athreya, Hyejin Yoon, Oana Carja, Bhavna Hora, Peter Hraber, Ethan Romero-Severson, Chunlai Jiang, Xiaojun Li, Shuyi Wang, Hui Li, Jesus F. Salazar-Gonzalez, Maria G. Salazar, Nilu Goonetilleke, Brandon F. Keele, David C. Montefiori, Myron S. Cohen, George M. Shaw, Beatrice H. Hahn, Andrew J. McMichael, Barton F. Haynes, Bette Korber, Tanmoy Bhattacharya, Feng Gao
Published 2018-05-01

Correction: Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization.

by Cecilia Rademeyer, Bette Korber, Michael S Seaman, Elena E Giorgi, Ruwayhida Thebus, Alexander Robles, Daniel J Sheward, Kshitij Wagh, Jetta Garrity, Brittany R Carey, Hongmei Gao, Kelli M Greene, Haili Tang, Gama P Bandawe, Jinny C Marais, Thabo E Diphoko, Peter Hraber, Nancy Tumba, Penny L Moore, Glenda E Gray, James Kublin, M Juliana McElrath, Marion Vermeulen, Keren Middelkoop, Linda-Gail Bekker, Michael Hoelscher, Leonard Maboko, Joseph Makhema, Merlin L Robb, Salim Abdool Karim, Quarraisha Abdool Karim, Jerome H Kim, Beatrice H Hahn, Feng Gao, Ronald Swanstrom, Lynn Morris, David C Montefiori, Carolyn Williamson
Published 2017-09-01

Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization.

by Cecilia Rademeyer, Bette Korber, Michael S Seaman, Elena E Giorgi, Ruwayhida Thebus, Alexander Robles, Daniel J Sheward, Kshitij Wagh, Jetta Garrity, Brittany R Carey, Hongmei Gao, Kelli M Greene, Haili Tang, Gama P Bandawe, Jinny C Marais, Thabo E Diphoko, Peter Hraber, Nancy Tumba, Penny L Moore, Glenda E Gray, James Kublin, M Juliana McElrath, Marion Vermeulen, Keren Middelkoop, Linda-Gail Bekker, Michael Hoelscher, Leonard Maboko, Joseph Makhema, Merlin L Robb, Salim Abdool Karim, Quarraisha Abdool Karim, Jerome H Kim, Beatrice H Hahn, Feng Gao, Ronald Swanstrom, Lynn Morris, David C Montefiori, Carolyn Williamson
Published 2016-07-01

Human Non-neutralizing HIV-1 Envelope Monoclonal Antibodies Limit the Number of Founder Viruses during SHIV Mucosal Infection in Rhesus Macaques.

by Sampa Santra, Georgia D Tomaras, Ranjit Warrier, Nathan I Nicely, Hua-Xin Liao, Justin Pollara, Pinghuang Liu, S Munir Alam, Ruijun Zhang, Sarah L Cocklin, Xiaoying Shen, Ryan Duffy, Shi-Mao Xia, Robert J Schutte, Charles W Pemble Iv, S Moses Dennison, Hui Li, Andrew Chao, Kora Vidnovic, Abbey Evans, Katja Klein, Amit Kumar, James Robinson, Gary Landucci, Donald N Forthal, David C Montefiori, Jaranit Kaewkungwal, Sorachai Nitayaphan, Punnee Pitisuttithum, Supachai Rerks-Ngarm, Merlin L Robb, Nelson L Michael, Jerome H Kim, Kelly A Soderberg, Elena E Giorgi, Lily Blair, Bette T Korber, Christiane Moog, Robin J Shattock, Norman L Letvin, Joern E Schmitz, M A Moody, Feng Gao, Guido Ferrari, George M Shaw, Barton F Haynes
Published 2015-08-01