Estimating the Timing of Early Simian-Human Immunodeficiency Virus Infections: a Comparison between Poisson Fitter and BEAST

by Elena E. Giorgi, Hui Li, Tanmoy Bhattacharya, George M. Shaw, Bette Korber
Published 2020-03-01

Collapse of Cytolytic Potential in SIV-Specific CD8+ T Cells Following Acute SIV Infection in Rhesus Macaques.

by Emily R Roberts, Diane G Carnathan, Hui Li, George M Shaw, Guido Silvestri, Michael R Betts
Published 2016-12-01

Assessing routes of hepatitis C transmission in HIV-infected men who have sex with men using single genome sequencing.

by Hui Li, Kristen M Marks, Andrew H Talal, Wouter O van Seggelen, Bisher Akil, Asa Radix, Shirish Huprikar, Andrea D Branch, Shuyi Wang, George M Shaw, Daniel S Fierer
Published 2020-01-01

A signature in HIV-1 envelope leader peptide associated with transition from acute to chronic infection impacts envelope processing and infectivity.

by Mohammed Asmal, Ina Hellmann, Weimin Liu, Brandon F Keele, Alan S Perelson, Tanmoy Bhattacharya, S Gnanakaran, Marcus Daniels, Barton F Haynes, Bette T Korber, Beatrice H Hahn, George M Shaw, Norman L Letvin
Published 2011-01-01

Quantifying the diversification of hepatitis C virus (HCV) during primary infection: estimates of the in vivo mutation rate.

by Ruy M Ribeiro, Hui Li, Shuyi Wang, Mark B Stoddard, Gerald H Learn, Bette T Korber, Tanmoy Bhattacharya, Jeremie Guedj, Erica H Parrish, Beatrice H Hahn, George M Shaw, Alan S Perelson
Published 2012-01-01

Escape from autologous neutralizing antibodies in acute/early subtype C HIV-1 infection requires multiple pathways.

by Rong Rong, Bing Li, Rebecca M Lynch, Richard E Haaland, Megan K Murphy, Joseph Mulenga, Susan A Allen, Abraham Pinter, George M Shaw, Eric Hunter, James E Robinson, S Gnanakaran, Cynthia A Derdeyn
Published 2009-09-01

B cell recognition of the conserved HIV-1 co-receptor binding site is altered by endogenous primate CD4.

by Mattias N E Forsell, Barna Dey, Andreas Mörner, Krisha Svehla, Sijy O'dell, Carl-Magnus Högerkorp, Gerald Voss, Rigmor Thorstensson, George M Shaw, John R Mascola, Gunilla B Karlsson Hedestam, Richard T Wyatt
Published 2008-10-01

Risk to Human Health from a Plethora of Simian Immunodeficiency Viruses in Primate Bushmeat

by Martine Peeters, Valerie Courgnaud, Bernadette Abela, Philippe Auzel, Xavier Pourrut, Frederic Bibollet-Ruche, Severin Loul, Florian Liegeois, Cristelle Butel, Denis Koulagna, Eitel Mpoudi-Ngole, George M. Shaw, Beatrice H. Hahn, Eric Delaporte
Published 2002-05-01

HIV evolution in early infection: selection pressures, patterns of insertion and deletion, and the impact of APOBEC.

by Natasha Wood, Tanmoy Bhattacharya, Brandon F Keele, Elena Giorgi, Michael Liu, Brian Gaschen, Marcus Daniels, Guido Ferrari, Barton F Haynes, Andrew McMichael, George M Shaw, Beatrice H Hahn, Bette Korber, Cathal Seoighe
Published 2009-05-01

Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1.

by Richard E Haaland, Paulina A Hawkins, Jesus Salazar-Gonzalez, Amber Johnson, Amanda Tichacek, Etienne Karita, Olivier Manigart, Joseph Mulenga, Brandon F Keele, George M Shaw, Beatrice H Hahn, Susan A Allen, Cynthia A Derdeyn, Eric Hunter
Published 2009-01-01

Genetic signatures in the envelope glycoproteins of HIV-1 that associate with broadly neutralizing antibodies.

by S Gnanakaran, Marcus G Daniels, Tanmoy Bhattacharya, Alan S Lapedes, Anurag Sethi, Ming Li, Haili Tang, Kelli Greene, Hongmei Gao, Barton F Haynes, Myron S Cohen, George M Shaw, Michael S Seaman, Amit Kumar, Feng Gao, David C Montefiori, Bette Korber
Published 2010-01-01

Small CD4 Mimetics Prevent HIV-1 Uninfected Bystander CD4+ T Cell Killing Mediated by Antibody-dependent Cell-mediated Cytotoxicity

by Jonathan Richard, Maxime Veillette, Shilei Ding, Daria Zoubchenok, Nirmin Alsahafi, Mathieu Coutu, Nathalie Brassard, Jongwoo Park, Joel R. Courter, Bruno Melillo, Amos B. Smith III, George M. Shaw, Beatrice H. Hahn, Joseph Sodroski, Daniel E. Kaufmann, Andrés Finzi
Published 2016-01-01

Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria

by Sesh A. Sundararaman, Lindsey J. Plenderleith, Weimin Liu, Dorothy E. Loy, Gerald H. Learn, Yingying Li, Katharina S. Shaw, Ahidjo Ayouba, Martine Peeters, Sheri Speede, George M. Shaw, Frederic D. Bushman, Dustin Brisson, Julian C. Rayner, Paul M. Sharp, Beatrice H. Hahn
Published 2016-03-01

The C3/465 glycan hole cluster in BG505 HIV-1 envelope is the major neutralizing target involved in preventing mucosal SHIV infection.

by Tysheena P Charles, Samantha L Burton, Prabhu S Arunachalam, Christopher A Cottrell, Leigh M Sewall, Venkata S Bollimpelli, Sailaja Gangadhara, Antu K Dey, Andrew B Ward, George M Shaw, Eric Hunter, Rama R Amara, Bali Pulendran, Marit J van Gils, Cynthia A Derdeyn
Published 2021-02-01

Multi-dose Romidepsin Reactivates Replication Competent SIV in Post-antiretroviral Rhesus Macaque Controllers.

by Benjamin B Policicchio, Cuiling Xu, Egidio Brocca-Cofano, Kevin D Raehtz, Tianyu He, Dongzhu Ma, Hui Li, Ranjit Sivanandham, George S Haret-Richter, Tammy Dunsmore, Anita Trichel, John W Mellors, Beatrice H Hahn, George M Shaw, Ruy M Ribeiro, Ivona Pandrea, Cristian Apetrei
Published 2016-09-01

Effective treatment of SIVcpz-induced immunodeficiency in a captive western chimpanzee

by Hannah J. Barbian, Raven Jackson-Jewett, Corrine S. Brown, Frederic Bibollet-Ruche, Gerald H. Learn, Timothy Decker, Edward F. Kreider, Yingying Li, Thomas N. Denny, Paul M. Sharp, George M. Shaw, Jeffrey Lifson, Edward P. Acosta, Michael S. Saag, Katharine J. Bar, Beatrice H. Hahn
Published 2017-06-01

Targeted Isolation of Antibodies Directed against Major Sites of SIV Env Vulnerability.

by Rosemarie D Mason, Hugh C Welles, Cameron Adams, Bimal K Chakrabarti, Jason Gorman, Tongqing Zhou, Richard Nguyen, Sijy O'Dell, Sabrina Lusvarghi, Carole A Bewley, Hui Li, George M Shaw, Zizhang Sheng, Lawrence Shapiro, Richard Wyatt, Peter D Kwong, John R Mascola, Mario Roederer
Published 2016-04-01

Correction: Targeted Isolation of Antibodies Directed against Major Sites of SIV Env Vulnerability.

by Rosemarie D Mason, Hugh C Welles, Cameron Adams, Bimal K Chakrabarti, Jason Gorman, Tongqing Zhou, Richard Nguyen, Sijy O'Dell, Sabrina Lusvarghi, Carole A Bewley, Hui Li, George M Shaw, Zizhang Sheng, Lawrence Shapiro, Richard Wyatt, Peter D Kwong, John R Mascola, Mario Roederer
Published 2016-05-01

Elucidation of hepatitis C virus transmission and early diversification by single genome sequencing.

by Hui Li, Mark B Stoddard, Shuyi Wang, Lily M Blair, Elena E Giorgi, Erica H Parrish, Gerald H Learn, Peter Hraber, Paul A Goepfert, Michael S Saag, Thomas N Denny, Barton F Haynes, Beatrice H Hahn, Ruy M Ribeiro, Alan S Perelson, Bette T Korber, Tanmoy Bhattacharya, George M Shaw
Published 2012-01-01

Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants

by Peter Hraber, Bette Korber, Kshitij Wagh, Elena E. Giorgi, Tanmoy Bhattacharya, S. Gnanakaran, Alan S. Lapedes, Gerald H. Learn, Edward F. Kreider, Yingying Li, George M. Shaw, Beatrice H. Hahn, David C. Montefiori, S. Munir Alam, Mattia Bonsignori, M. Anthony Moody, Hua-Xin Liao, Feng Gao, Barton F. Haynes
Published 2015-10-01