DNA familial binding profiles made easy: comparison of various motif alignment and clustering strategies.

by Shaun Mahony, Philip E Auron, Panayiotis V Benos
Published 2007-03-01

RNA deep sequencing reveals differential microRNA expression during development of sea urchin and sea star.

by Sabah Kadri, Veronica F Hinman, Panayiotis V Benos
Published 2011-01-01

An improvement of ComiR algorithm for microRNA target prediction by exploiting coding region sequences of mRNAs

by Giorgio Bertolazzi, Panayiotis V. Benos, Michele Tumminello, Claudia Coronnello
Published 2020-09-01

Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data.

by David L Corcoran, Kusum V Pandit, Ben Gordon, Arindam Bhattacharjee, Naftali Kaminski, Panayiotis V Benos
Published 2009-01-01

miR-1207-5p Can Contribute to Dysregulation of Inflammatory Response in COVID-19 via Targeting SARS-CoV-2 RNA

by Giorgio Bertolazzi, Giorgio Bertolazzi, Chiara Cipollina, Chiara Cipollina, Panayiotis V. Benos, Michele Tumminello, Michele Tumminello, Claudia Coronnello
Published 2020-10-01

Expression patterns of small numbers of transcripts from functionally-related pathways predict survival in multiple cancers

by Jordan Mandel, Huabo Wang, Daniel P. Normolle, Wei Chen, Qi Yan, Peter C. Lucas, Panayiotis V. Benos, Edward V. Prochownik
Published 2019-07-01

Novel modeling of combinatorial miRNA targeting identifies SNP with potential role in bone density.

by Claudia Coronnello, Ryan Hartmaier, Arshi Arora, Luai Huleihel, Kusum V Pandit, Abha S Bais, Michael Butterworth, Naftali Kaminski, Gary D Stormo, Steffi Oesterreich, Panayiotis V Benos
Published 2012-01-01

Expression of regulatory platelet microRNAs in patients with sickle cell disease.

by Shilpa Jain, Maria G Kapetanaki, Nalini Raghavachari, Kimberly Woodhouse, Guoying Yu, Suchitra Barge, Claudia Coronnello, Panayiotis V Benos, Gregory J Kato, Naftali Kaminski, Mark T Gladwin
Published 2013-01-01

High throughput determination of TGFβ1/SMAD3 targets in A549 lung epithelial cells.

by Yingze Zhang, Daniel Handley, Tommy Kaplan, Haiying Yu, Abha S Bais, Thomas Richards, Kusum V Pandit, Qilu Zeng, Panayiotis V Benos, Nir Friedman, Oliver Eickelberg, Naftali Kaminski
Published 2011-01-01

Myofibroblast transcriptome indicates SFRP2hi fibroblast progenitors in systemic sclerosis skin

by Tracy Tabib, Mengqi Huang, Nina Morse, Anna Papazoglou, Rithika Behera, Minxue Jia, Melissa Bulik, Daisy E. Monier, Panayiotis V. Benos, Wei Chen, Robyn Domsic, Robert Lafyatis
Published 2021-07-01

Human ex vivo lung perfusion: a novel model to study human lung diseases

by Nayra Cárdenes, John Sembrat, Kentaro Noda, Tyler Lovelace, Diana Álvarez, Humberto E. Trejo Bittar, Brian J. Philips, Mehdi Nouraie, Panayiotis V. Benos, Pablo G. Sánchez, Mauricio Rojas
Published 2021-01-01

Ribosomopathy-like properties of murine and human cancers.

by Sucheta Kulkarni, James M Dolezal, Huabo Wang, Laura Jackson, Jie Lu, Brian P Frodey, Atinuke Dosunmu-Ogunbi, Youjun Li, Marc Fromherz, Audry Kang, Lucas Santana-Santos, Panayiotis V Benos, Edward V Prochownik
Published 2017-01-01

Gene expression profiling distinguishes proneural glioma stem cells from mesenchymal glioma stem cells

by Uma R. Chandran, Soumya Luthra, Lucas Santana-Santos, Ping Mao, Sung-Hak Kim, Mutsuko Minata, Jianfeng Li, Panayiotis V. Benos, Mao DeWang, Bo Hu, Shi-Yuan Cheng, Ichiro Nakano, Robert W. Sobol
Published 2015-09-01

Large scale comparison of innate responses to viral and bacterial pathogens in mouse and macaque.

by Guy Zinman, Rachel Brower-Sinning, Chineye H Emeche, Jason Ernst, Grace Tzu-Wei Huang, Shaun Mahony, Amy J Myers, Dawn M O'Dee, JoAnne L Flynn, Gerard J Nau, Ted M Ross, Russell D Salter, Panayiotis V Benos, Ziv Bar Joseph, Penelope A Morel
Published 2011-01-01

Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex.

by Katherine Belov, Janine E Deakin, Anthony T Papenfuss, Michelle L Baker, Sandra D Melman, Hannah V Siddle, Nicolas Gouin, David L Goode, Tobias J Sargeant, Mark D Robinson, Matthew J Wakefield, Shaun Mahony, Joseph G R Cross, Panayiotis V Benos, Paul B Samollow, Terence P Speed, Jennifer A Marshall Graves, Robert D Miller
Published 2006-03-01

Respiratory Microbiome Profiling for Etiologic Diagnosis of Pneumonia in Mechanically Ventilated Patients

by Georgios D. Kitsios, Georgios D. Kitsios, Adam Fitch, Dimitris V. Manatakis, Sarah F. Rapport, Kelvin Li, Shulin Qin, Shulin Qin, Joseph Huwe, Yingze Zhang, Yohei Doi, John Evankovich, William Bain, Janet S. Lee, Barbara Methé, Barbara Methé, Panayiotis V. Benos, Alison Morris, Alison Morris, Alison Morris, Bryan J. McVerry, Bryan J. McVerry
Published 2018-07-01