Genome-wide search for Zelda-like chromatin signatures identifies GAF as a pioneer factor in early fly development

by Arbel Moshe, Tommy Kaplan
Published 2017-07-01

Ab initio prediction of transcription factor targets using structural knowledge.

by Tommy Kaplan, Nir Friedman, Hanah Margalit
Published 2005-06-01

Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains

by Gil Ron, Yuval Globerson, Dror Moran, Tommy Kaplan
Published 2017-12-01

Correction: A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval.

by Naomi Habib, Tommy Kaplan, Hanah Margalit, Nir Friedman
Published 2011-05-01

A novel Bayesian DNA motif comparison method for clustering and retrieval.

by Naomi Habib, Tommy Kaplan, Hanah Margalit, Nir Friedman
Published 2008-02-01

TAF7L modulates brown adipose tissue formation

by Haiying Zhou, Bo Wan, Ivan Grubisic, Tommy Kaplan, Robert Tjian
Published 2014-05-01

Roles for H2A.Z and its acetylation in GAL1 transcription and gene induction, but not GAL1-transcriptional memory.

by Jeffrey E Halley, Tommy Kaplan, Alice Y Wang, Michael S Kobor, Jasper Rine
Published 2010-06-01

Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition

by Xiao-Yong Li, Melissa M Harrison, Jacqueline E Villalta, Tommy Kaplan, Michael B Eisen
Published 2014-10-01

Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition.

by Melissa M Harrison, Xiao-Yong Li, Tommy Kaplan, Michael R Botchan, Michael B Eisen
Published 2011-10-01

Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression.

by Mathilde Paris, Tommy Kaplan, Xiao Yong Li, Jacqueline E Villalta, Susan E Lott, Michael B Eisen
Published 2013-01-01

Single-nucleosome mapping of histone modifications in S. cerevisiae.

by Chih Long Liu, Tommy Kaplan, Minkyu Kim, Stephen Buratowski, Stuart L Schreiber, Nir Friedman, Oliver J Rando
Published 2005-10-01

Dual functions of TAF7L in adipocyte differentiation

by Haiying Zhou, Tommy Kaplan, Yan Li, Ivan Grubisic, Zhengjian Zhang, P Jeremy Wang, Michael B Eisen, Robert Tjian
Published 2013-01-01

Detection of Cell Types Contributing to Cancer From Circulating, Cell-Free Methylated DNA

by Megan E. Barefoot, Netanel Loyfer, Amber J. Kiliti, Amber J. Kiliti, A. Patrick McDeed, Tommy Kaplan, Anton Wellstein
Published 2021-07-01

Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development.

by Tommy Kaplan, Xiao-Yong Li, Peter J Sabo, Sean Thomas, John A Stamatoyannopoulos, Mark D Biggin, Michael B Eisen
Published 2011-02-01

Genome-wide analysis of androgen receptor targets reveals COUP-TF1 as a novel player in human prostate cancer.

by Ruth Perets, Tommy Kaplan, Ilan Stein, Guy Hidas, Shay Tayeb, Eti Avraham, Yinon Ben-Neriah, Itamar Simon, Eli Pikarsky
Published 2012-01-01

Post-transcriptional 3´-UTR cleavage of mRNA transcripts generates thousands of stable uncapped autonomous RNA fragments

by Yuval Malka, Avital Steiman-Shimony, Eran Rosenthal, Liron Argaman, Leonor Cohen-Daniel, Eliran Arbib, Hanah Margalit, Tommy Kaplan, Michael Berger
Published 2017-12-01

Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast.

by Tommy Kaplan, Chih Long Liu, Judith A Erkmann, John Holik, Michael Grunstein, Paul D Kaufman, Nir Friedman, Oliver J Rando
Published 2008-11-01

Unraveling the transcriptional regulation of TWIST1 in limb development.

by Naama Hirsch, Reut Eshel, Reut Bar Yaacov, Tal Shahar, Fania Shmulevich, Idit Dahan, Noam Levaot, Tommy Kaplan, Darío G Lupiáñez, Ramon Y Birnbaum
Published 2018-10-01

Genomic retargeting of p53 and CTCF is associated with transcriptional changes during oncogenic HRas-induced transformation

by Michal Schwartz, Avital Sarusi Portugez, Bracha Zukerman Attia, Miriam Tannenbaum, Leslie Cohen, Olga Loza, Emily Chase, Yousef Turman, Tommy Kaplan, Zaidoun Salah, Ofir Hakim
Published 2020-11-01

High throughput determination of TGFβ1/SMAD3 targets in A549 lung epithelial cells.

by Yingze Zhang, Daniel Handley, Tommy Kaplan, Haiying Yu, Abha S Bais, Thomas Richards, Kusum V Pandit, Qilu Zeng, Panayiotis V Benos, Nir Friedman, Oliver Eickelberg, Naftali Kaminski
Published 2011-01-01