Gramtools enables multiscale variation analysis with genome graphs

by Brice Letcher, Martin Hunt, Zamin Iqbal
Published 2021-09-01

Inferring synteny between genome assemblies: a systematic evaluation

by Dang Liu, Martin Hunt, Isheng J Tsai
Published 2018-01-01

Homozygosity Mapping Reveals Population History and Trait Architecture in Self-Incompatible Pear (Pyrus spp.)

by Satish Kumar, Cecilia Hong Deng, Martin Hunt, Chris Kirk, Claudia Wiedow, Daryl Rowan, Jun Wu, Lester Brewer
Published 2021-01-01

In Vivo Assessment of Resistant Starch Degradation by the Caecal Microbiota of Mice Using RNA-Based Stable Isotope Probing—A Proof-of-Principle Study

by Elena Herrmann, Wayne Young, Verena Reichert-Grimm, Severin Weis, Christian U. Riedel, Douglas Rosendale, Halina Stoklosinski, Martin Hunt, Markus Egert
Published 2018-02-01

Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans.

by Roz Laing, Martin Hunt, Anna V Protasio, Gary Saunders, Karen Mungall, Steven Laing, Frank Jackson, Michael Quail, Robin Beech, Matthew Berriman, John S Gilleard
Published 2011-01-01

Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs

by Rachel M. Colquhoun, Michael B. Hall, Leandro Lima, Leah W. Roberts, Kerri M. Malone, Martin Hunt, Brice Letcher, Jane Hawkey, Sophie George, Louise Pankhurst, Zamin Iqbal
Published 2021-09-01

MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni.

by Anna V Protasio, Stijn van Dongen, Julie Collins, Leonor Quintais, Diogo M Ribeiro, Florian Sessler, Martin Hunt, Gabriel Rinaldi, James J Collins, Anton J Enright, Matthew Berriman
Published 2017-05-01

Transcriptome Responses of Ripe Cherry Tomato Fruit Exposed to Chilling and Rewarming Identify Reversible and Irreversible Gene Expression Changes

by Donald A. Hunter, Nathanael J. Napier, Zoe A. Erridge, Ali Saei, Ronan K. Y. Chen, Marian J. McKenzie, Erin M. O’Donoghue, Martin Hunt, Laurie Favre, Laurie Favre, Ross E. Lill, David A. Brummell
Published 2021-07-01

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

by Jane Hawkey, Kalani Paranagama, Kate S. Baker, Rebecca J. Bengtsson, François-Xavier Weill, Nicholas R. Thomson, Stephen Baker, Louise Cerdeira, Zamin Iqbal, Martin Hunt, Danielle J. Ingle, Timothy J. Dallman, Claire Jenkins, Deborah A. Williamson, Kathryn E. Holt
Published 2021-05-01

Exploring Plasmodium falciparum Var Gene Expression to Assess Host Selection Pressure on Parasites During Infancy

by Cheryl A. Kivisi, Cheryl A. Kivisi, Cheryl A. Kivisi, Michelle Muthui, Martin Hunt, Greg Fegan, Thomas Dan Otto, George Githinji, George M. Warimwe, George M. Warimwe, Richard Rance, Kevin Marsh, Kevin Marsh, Peter C. Bull, Abdirahman I. Abdi, Abdirahman I. Abdi
Published 2019-10-01

A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions.

by Carine Makendi, Andrew J Page, Brendan W Wren, Tu Le Thi Phuong, Simon Clare, Christine Hale, David Goulding, Elizabeth J Klemm, Derek Pickard, Chinyere Okoro, Martin Hunt, Corinne N Thompson, Nguyen Phu Huong Lan, Nhu Tran Do Hoang, Guy E Thwaites, Simon Le Hello, Anne Brisabois, François-Xavier Weill, Stephen Baker, Gordon Dougan
Published 2016-02-01

Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus.

by Taisei Kikuchi, James A Cotton, Jonathan J Dalzell, Koichi Hasegawa, Natsumi Kanzaki, Paul McVeigh, Takuma Takanashi, Isheng J Tsai, Samuel A Assefa, Peter J A Cock, Thomas Dan Otto, Martin Hunt, Adam J Reid, Alejandro Sanchez-Flores, Kazuko Tsuchihara, Toshiro Yokoi, Mattias C Larsson, Johji Miwa, Aaron G Maule, Norio Sahashi, John T Jones, Matthew Berriman
Published 2011-09-01

A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni.

by Anna V Protasio, Isheng J Tsai, Anne Babbage, Sarah Nichol, Martin Hunt, Martin A Aslett, Nishadi De Silva, Giles S Velarde, Tim J C Anderson, Richard C Clark, Claire Davidson, Gary P Dillon, Nancy E Holroyd, Philip T LoVerde, Christine Lloyd, Jacquelline McQuillan, Guilherme Oliveira, Thomas D Otto, Sophia J Parker-Manuel, Michael A Quail, R Alan Wilson, Adhemar Zerlotini, David W Dunne, Matthew Berriman
Published 2012-01-01

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe [version 1; peer review: 2 approved, 1 approved with reservations]

by Martin Hunt, Phelim Bradley, Simon Grandjean Lapierre, Simon Heys, Mark Thomsit, Michael B. Hall, Kerri M. Malone, Penelope Wintringer, Timothy M. Walker, Daniela M. Cirillo, Iñaki Comas, Maha R. Farhat, Phillip Fowler, Jennifer Gardy, Nazir Ismail, Thomas A. Kohl, Vanessa Mathys, Matthias Merker, Stefan Niemann, Shaheed Vally Omar, Vitali Sintchenko, Grace Smith, Dick van Soolingen, Philip Supply, Sabira Tahseen, Mark Wilcox, Irena Arandjelovic, Tim E. A. Peto, Derrick W. Crook, Zamin Iqbal
Published 2019-12-01