GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure

by Yu Wan, Ryan R. Wick, Justin Zobel, Danielle J. Ingle, Michael Inouye, Kathryn E. Holt
Published 2020-09-01

Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers.

by Danielle J Ingle, Satheesh Nair, Hassan Hartman, Philip M Ashton, Zoe A Dyson, Martin Day, Joanne Freedman, Marie A Chattaway, Kathryn E Holt, Timothy J Dallman
Published 2019-09-01

Re-evaluation of a Neonatal Mouse Model of Infection With Enterotoxigenic Escherichia coli

by Carla J. Carroll, Dianna M. Hocking, Kristy I. Azzopardi, Kristy I. Azzopardi, Judyta Praszkier, Vicki Bennett-Wood, Kaylani Almeida, Danielle J. Ingle, Sarah L. Baines, Marija Tauschek, Roy M. Robins-Browne, Roy M. Robins-Browne
Published 2021-03-01

Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era

by Deborah A. Williamson, Eric P. F. Chow, Claire L. Gorrie, Torsten Seemann, Danielle J. Ingle, Nasra Higgins, Marion Easton, George Taiaroa, Yonatan H. Grad, Jason C. Kwong, Christopher K. Fairley, Marcus Y. Chen, Benjamin P. Howden
Published 2019-09-01

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei

by Jane Hawkey, Kalani Paranagama, Kate S. Baker, Rebecca J. Bengtsson, François-Xavier Weill, Nicholas R. Thomson, Stephen Baker, Louise Cerdeira, Zamin Iqbal, Martin Hunt, Danielle J. Ingle, Timothy J. Dallman, Claire Jenkins, Deborah A. Williamson, Kathryn E. Holt
Published 2021-05-01

Evolutionary dynamics of multidrug resistant Salmonella enterica serovar 4,[5],12:i:- in Australia

by Danielle J. Ingle, Rebecca L. Ambrose, Sarah L. Baines, Sebastian Duchene, Anders Gonçalves da Silva, Darren Y. J. Lee, Miriam Jones, Mary Valcanis, George Taiaroa, Susan A. Ballard, Martyn D. Kirk, Benjamin P. Howden, Jaclyn S. Pearson, Deborah A. Williamson
Published 2021-08-01

Genomic Analysis of Fluoroquinolone- and Tetracycline-Resistant Campylobacter jejuni Sequence Type 6964 in Humans and Poultry, New Zealand, 2014–2016

by Nigel P. French, Ji Zhang, Glen P. Carter, Anne C. Midwinter, Patrick J. Biggs, Kristin Dyet, Brent J. Gilpin, Danielle J. Ingle, Kerry Mulqueen, Lynn E. Rogers, David A. Wilkinson, Sabrina S. Greening, Petra Muellner, Ahmed Fayaz, Deborah A. Williamson
Published 2019-12-01