Harmonized Genome Wide Typing of Tubercle Bacilli Using a Web-Based Gene-By-Gene Nomenclature SystemResearch in context

by Thomas A. Kohl, Dag Harmsen, Jörg Rothgänger, Timothy Walker, Roland Diel, Stefan Niemann
Published 2018-08-01

Analysis of Phylogenetic Variation of Stenotrophomonas maltophilia Reveals Human-Specific Branches

by Joerg Steinmann, Joerg Steinmann, Uwe Mamat, Ebrahim M. Abda, Lisa Kirchhoff, Wolfgang R. Streit, Ulrich E. Schaible, Ulrich E. Schaible, Stefan Niemann, Stefan Niemann, Thomas A. Kohl, Thomas A. Kohl
Published 2018-04-01

Survival of hypoxia-induced dormancy is not a common feature of all strains of the Mycobacterium tuberculosis complex

by Barbara Tizzano, Tobias K. Dallenga, Christian Utpatel, Jochen Behrends, Susanne Homolka, Thomas A. Kohl, Stefan Niemann
Published 2021-01-01

Tracing the Spread of Clostridium difficile Ribotype 027 in Germany Based on Bacterial Genome Sequences.

by Matthias Steglich, Andreas Nitsche, Lutz von Müller, Mathias Herrmann, Thomas A Kohl, Stefan Niemann, Ulrich Nübel
Published 2015-01-01

Whole-Genome Sequencing for Risk Assessment of Long-term Shiga Toxin–producing Escherichia coli

by Johannes K.-M. Knobloch, Stefan Niemann, Thomas A. Kohl, Ulrich Lindner, Martin Nitschke, Friedhelm Sayk, Werner Solbach
Published 2014-04-01

Insertion and deletion evolution reflects antibiotics selection pressure in a Mycobacterium tuberculosis outbreak.

by Maxime Godfroid, Tal Dagan, Matthias Merker, Thomas A Kohl, Roland Diel, Florian P Maurer, Stefan Niemann, Anne Kupczok
Published 2020-09-01

Understanding Mycobacterium tuberculosis evolution in times of antibiotic treatment – A whole genome approach

by Matthias Merker, Silke Feuerriegel, Helen Cox, Sonia Borrell, Sebastien Gagneux, Sabine Rüsch-Gerdes, Thomas A Kohl, Stefan Niemann
Published 2015-01-01

Longitudinal Outbreak of Multidrug-Resistant Tuberculosis in a Hospital Setting, Serbia

by Irena Arandjelović, Matthias Merker, Elvira Richter, Thomas A. Kohl, Branislava Savić, Ivan Soldatović, Thierry Wirth, Dragana Vuković, Stefan Niemann
Published 2019-03-01

Transmission patterns of rifampicin resistant Mycobacterium tuberculosis complex strains in Cameroon: a genomic epidemiological study

by Matthias Merker, Nkongho F. Egbe, Yannick R. Ngangue, Comfort Vuchas, Thomas A. Kohl, Viola Dreyer, Christopher Kuaban, Jürgen Noeske, Stefan Niemann, Melissa S. Sander
Published 2021-08-01

Whole genome sequencing reveals complex evolution patterns of multidrug-resistant Mycobacterium tuberculosis Beijing strains in patients.

by Matthias Merker, Thomas A Kohl, Andreas Roetzer, Leona Truebe, Elvira Richter, Sabine Rüsch-Gerdes, Lanfranco Fattorini, Marco R Oggioni, Helen Cox, Francis Varaine, Stefan Niemann
Published 2013-01-01

Aortic Endograft Infection with Mycobacterium chimaera and Granulicatella adiacens, Switzerland, 2014

by Andreas Plate, Thomas A. Kohl, Peter M. Keller, Sabine Majer, Rosamaria Fulchini, Carol Strahm, Cristoforo Medugno, Zoran Rancic, Lars Husmann, Hugo Sax, Stefan Niemann, Barbara Hasse
Published 2018-09-01

Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study.

by Andreas Roetzer, Roland Diel, Thomas A Kohl, Christian Rückert, Ulrich Nübel, Jochen Blom, Thierry Wirth, Sebastian Jaenicke, Sieglinde Schuback, Sabine Rüsch-Gerdes, Philip Supply, Jörn Kalinowski, Stefan Niemann
Published 2013-01-01

Secretome characterization of clinical isolates from the Mycobacterium abscessus complex provides insight into antigenic differences

by Fernanda Cornejo-Granados, Thomas A. Kohl, Flor Vásquez Sotomayor, Sönke Andres, Rogelio Hernández-Pando, Juan Manuel Hurtado-Ramirez, Christian Utpatel, Stefan Niemann, Florian P. Maurer, Adrian Ochoa-Leyva
Published 2021-05-01

Phenotypic heterogeneity affects Stenotrophomonas maltophilia K279a colony morphotypes and β-lactamase expression

by Ebrahim Mama Abda, Dagmar eKrysciak, Ines eKrohn-Molt, Uwe eMamat, Christel eSchmeisser, Konrad U. Förstner, Ulrich E. Schaible, Thomas A. Kohl, Stefan eNieman, Stefan eNieman, Wolfgang R. Streit
Published 2015-12-01

Multidrug- and Extensively Drug-Resistant Mycobacterium tuberculosis Beijing Clades, Ukraine, 2015

by Matthias Merker, Elena Nikolaevskaya, Thomas A. Kohl, Barbara Molina-Moya, Olha Pavlovska, Patrik Brännberg, Andrii Dudnyk, Valentyna Stokich, Ivan Barilar, Iryna Marynova, Tetiana Filipova, Cristina Prat, Anders Sjöstedt, Jose Dominguez, Olena Rzhepishevska, Stefan Niemann
Published 2020-03-01

The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiologyResearch in context

by Conor J. Meehan, Pieter Moris, Thomas A. Kohl, Jūlija Pečerska, Suriya Akter, Matthias Merker, Christian Utpatel, Patrick Beckert, Florian Gehre, Pauline Lempens, Tanja Stadler, Michel K. Kaswa, Denise Kühnert, Stefan Niemann, Bouke C. de Jong
Published 2018-11-01

Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex

by Matthias Merker, Thomas A. Kohl, Ivan Barilar, Sönke Andres, Philip W. Fowler, Erja Chryssanthou, Kristian Ängeby, Pontus Jureen, Danesh Moradigaravand, Julian Parkhill, Sharon J. Peacock, Thomas Schön, Florian P. Maurer, Timothy Walker, Claudio Köser, Stefan Niemann
Published 2020-03-01

Comparative analysis of phenotypic and genotypic antibiotic susceptibility patterns in Mycobacterium avium complex

by Nils Wetzstein, Thomas A. Kohl, Sönke Andres, Tilman G. Schultze, Ari Geil, Eunhee Kim, Teodora Biciusca, Christian Hügel, Michael Hogardt, Annette Lehn, Maria J.G.T. Vehreschild, Timo Wolf, Stefan Niemann, Florian P. Maurer, Thomas A. Wichelhaus
Published 2020-04-01

New Mycobacterium tuberculosis Complex Sublineage, Brazzaville, Congo

by Sven Malm, Laure S. Ghoma Linguissi, Emmanuel M. Tekwu, Jeannhey C. Vouvoungui, Thomas A. Kohl, Patrick Beckert, Anissa Sidibe, Sabine Rüsch-Gerdes, Igor K. Madzou-Laboum, Sylvie Kwedi, Véronique Penlap Beng, Matthias Frank, Francine Ntoumi, Stefan Niemann
Published 2017-03-01

Implementation of whole genome sequencing for tuberculosis diagnostics in a low-middle income, high MDR-TB burden country

by Monica Vogel, Christian Utpatel, Caroline Corbett, Thomas A. Kohl, Altyn Iskakova, Sevim Ahmedov, Uladzimir Antonenka, Viola Dreyer, Ainura Ibrahimova, Chynara Kamarli, Dilorom Kosimova, Vanessa Mohr, Evgeni Sahalchyk, Meerim Sydykova, Nagira Umetalieva, Abdylat Kadyrov, Gulmira Kalmambetova, Stefan Niemann, Harald Hoffmann
Published 2021-07-01