SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data.

by Hugo Varet, Loraine Brillet-Guéguen, Jean-Yves Coppée, Marie-Agnès Dillies
Published 2016-01-01

Non-Pathogenic Mopeia Virus Induces More Robust Activation of Plasmacytoid Dendritic Cells than Lassa Virus

by Justine Schaeffer, Stéphanie Reynard, Xavier Carnec, Natalia Pietrosemoli, Marie-Agnès Dillies, Sylvain Baize
Published 2019-03-01

Gene expression analysis in EBV-infected ataxia-telangiectasia cell lines by RNA-sequencing reveals protein synthesis defect and immune abnormalities

by Moussab Tatfi, Emeline Perthame, Kenzo-Hugo Hillion, Marie-Agnès Dillies, Hervé Menager, Olivier Hermine, Felipe Suarez
Published 2021-06-01

Lassa virus activates myeloid dendritic cells but suppresses their ability to stimulate T cells.

by Justine Schaeffer, Xavier Carnec, Stéphanie Reynard, Mathieu Mateo, Caroline Picard, Natalia Pietrosemoli, Marie-Agnès Dillies, Sylvain Baize
Published 2018-11-01

Identification of the virulence landscape essential for Entamoeba histolytica invasion of the human colon.

by Roman Thibeaux, Christian Weber, Chung-Chau Hon, Marie-Agnès Dillies, Patrick Avé, Jean-Yves Coppée, Elisabeth Labruyère, Nancy Guillén
Published 2013-01-01

Expanding the RpoS/σS-network by RNA sequencing and identification of σS-controlled small RNAs in Salmonella.

by Corinne Lévi-Meyrueis, Véronique Monteil, Odile Sismeiro, Marie-Agnès Dillies, Marc Monot, Bernd Jagla, Jean-Yves Coppée, Bruno Dupuy, Françoise Norel
Published 2014-01-01

Individual co-variation between viral RNA load and gene expression reveals novel host factors during early dengue virus infection of the Aedes aegypti midgut.

by Vincent Raquin, Sarah Hélène Merkling, Valérie Gausson, Isabelle Moltini-Conclois, Lionel Frangeul, Hugo Varet, Marie-Agnès Dillies, Maria-Carla Saleh, Louis Lambrechts
Published 2017-12-01

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns.

by Viviane Balloy, Hugo Varet, Marie-Agnès Dillies, Caroline Proux, Bernd Jagla, Jean-Yves Coppée, Olivier Tabary, Harriet Corvol, Michel Chignard, Loïc Guillot
Published 2015-01-01

Endoplasmic reticulum stress-sensing mechanism is activated in Entamoeba histolytica upon treatment with nitric oxide.

by Julien Santi-Rocca, Sherri Smith, Christian Weber, Erika Pineda, Chung-Chau Hon, Emma Saavedra, Alfonso Olivos-García, Sandrine Rousseau, Marie-Agnès Dillies, Jean-Yves Coppée, Nancy Guillén
Published 2012-01-01

Comparative analysis of viral RNA signatures on different RIG-I-like receptors

by Raul Y Sanchez David, Chantal Combredet, Odile Sismeiro, Marie-Agnès Dillies, Bernd Jagla, Jean-Yves Coppée, Marie Mura, Mathilde Guerbois Galla, Philippe Despres, Frédéric Tangy, Anastassia V Komarova
Published 2016-03-01

Tri-mannose grafting of chitosan nanocarriers remodels the macrophage response to bacterial infection

by Juan Manuel Coya, Laura De Matteis, Alexandre Giraud-Gatineau, Anne Biton, Inés Serrano-Sevilla, Anne Danckaert, Marie-Agnès Dillies, Brigitte Gicquel, Jesus M. De la Fuente, Ludovic Tailleux
Published 2019-01-01

Erratum to: Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans

by Sandrine Koechler, Jessica Cleiss-Arnold, Caroline Proux, Odile Sismeiro, Marie-Agnès Dillies, Florence Goulhen-Chollet, Florence Hommais, Didier Lièvremont, Florence Arsène-Ploetze, Jean-Yves Coppé, Philippe N Bertin
Published 2017-03-01

Docosahexaenoic acid inhibits Helicobacter pylori growth in vitro and mice gastric mucosa colonization.

by Marta Correia, Valérie Michel, António A Matos, Patrícia Carvalho, Maria J Oliveira, Rui M Ferreira, Marie-Agnès Dillies, Michel Huerre, Raquel Seruca, Ceu Figueiredo, Jose C Machado, Eliette Touati
Published 2012-01-01

Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation

by Evelyne Krin, Sebastian Aguilar Pierlé, Odile Sismeiro, Bernd Jagla, Marie-Agnès Dillies, Hugo Varet, Oihane Irazoki, Susana Campoy, Zoé Rouy, Stéphane Cruveiller, Claudine Médigue, Jean-Yves Coppée, Didier Mazel
Published 2018-05-01

Impact of the gut microbiota on the m6A epitranscriptome of mouse cecum and liver

by Sabrina Jabs, Anne Biton, Christophe Bécavin, Marie-Anne Nahori, Amine Ghozlane, Alessandro Pagliuso, Giulia Spanò, Vincent Guérineau, David Touboul, Quentin Giai Gianetto, Thibault Chaze, Mariette Matondo, Marie-Agnès Dillies, Pascale Cossart
Published 2020-03-01

Differences in gene transcriptomic pattern of Plasmodium falciparum in children with cerebral malaria and asymptomatic carriers.

by Talleh Almelli, Grégory Nuel, Emmanuel Bischoff, Agnès Aubouy, Mohamed Elati, Christian William Wang, Marie-Agnès Dillies, Jean-Yves Coppée, Georges Nko Ayissi, Leonardo Kishi Basco, Christophe Rogier, Nicaise Tuikue Ndam, Philippe Deloron, Rachida Tahar
Published 2014-01-01

Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas.

by Kelle C Freel, Martin C Krueger, Julien Farasin, Céline Brochier-Armanet, Valérie Barbe, Jeremy Andrès, Pierre-Etienne Cholley, Marie-Agnès Dillies, Bernd Jagla, Sandrine Koechler, Yann Leva, Ghislaine Magdelenat, Frédéric Plewniak, Caroline Proux, Jean-Yves Coppée, Philippe N Bertin, Hermann J Heipieper, Florence Arsène-Ploetze
Published 2015-01-01

Systemic viral spreading and defective host responses are associated with fatal Lassa fever in macaques

by Nicolas Baillet, Stéphanie Reynard, Emeline Perthame, Jimmy Hortion, Alexandra Journeaux, Mathieu Mateo, Xavier Carnec, Justine Schaeffer, Caroline Picard, Laura Barrot, Stéphane Barron, Audrey Vallve, Aurélie Duthey, Frédéric Jacquot, Cathy Boehringer, Grégory Jouvion, Natalia Pietrosemoli, Rachel Legendre, Marie-Agnès Dillies, Richard Allan, Catherine Legras-Lachuer, Caroline Carbonnelle, Hervé Raoul, Sylvain Baize
Published 2021-01-01