SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data.

by Hugo Varet, Loraine Brillet-Guéguen, Jean-Yves Coppée, Marie-Agnès Dillies
Published 2016-01-01

Distinct transcriptional signatures of bone marrow-derived C57BL/6 and DBA/2 dendritic leucocytes hosting live Leishmania amazonensis amastigotes.

by Emilie Giraud, Hervé Lecoeur, Guillaume Soubigou, Jean-Yves Coppée, Geneviève Milon, Eric Prina, Thierry Lang
Published 2012-01-01

The Legionella pneumophila genome evolved to accommodate multiple regulatory mechanisms controlled by the CsrA-system.

by Tobias Sahr, Christophe Rusniok, Francis Impens, Giulia Oliva, Odile Sismeiro, Jean-Yves Coppée, Carmen Buchrieser
Published 2017-02-01

Sleeping ribosomes: Bacterial signaling triggers RaiA mediated persistence to aminoglycosides

by Manon Lang, Evelyne Krin, Chloé Korlowski, Odile Sismeiro, Hugo Varet, Jean-Yves Coppée, Didier Mazel, Zeynep Baharoglu
Published 2021-10-01

Transcytosis subversion by M cell-to-enterocyte spread promotes Shigella flexneri and Listeria monocytogenes  intracellular bacterial dissemination.

by Camille Rey, Yuen-Yan Chang, Patricia Latour-Lambert, Hugo Varet, Caroline Proux, Rachel Legendre, Jean-Yves Coppée, Jost Enninga
Published 2020-04-01

Identification of the virulence landscape essential for Entamoeba histolytica invasion of the human colon.

by Roman Thibeaux, Christian Weber, Chung-Chau Hon, Marie-Agnès Dillies, Patrick Avé, Jean-Yves Coppée, Elisabeth Labruyère, Nancy Guillén
Published 2013-01-01

Starvation, together with the SOS response, mediates high biofilm-specific tolerance to the fluoroquinolone ofloxacin.

by Steve P Bernier, David Lebeaux, Alicia S DeFrancesco, Amandine Valomon, Guillaume Soubigou, Jean-Yves Coppée, Jean-Marc Ghigo, Christophe Beloin
Published 2013-01-01

Intracellular Staphylococcus aureus persisters upon antibiotic exposure

by Frédéric Peyrusson, Hugo Varet, Tiep Khac Nguyen, Rachel Legendre, Odile Sismeiro, Jean-Yves Coppée, Christiane Wolz, Tanel Tenson, Françoise Van Bambeke
Published 2020-05-01

Expanding the RpoS/σS-network by RNA sequencing and identification of σS-controlled small RNAs in Salmonella.

by Corinne Lévi-Meyrueis, Véronique Monteil, Odile Sismeiro, Marie-Agnès Dillies, Marc Monot, Bernd Jagla, Jean-Yves Coppée, Bruno Dupuy, Françoise Norel
Published 2014-01-01

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns.

by Viviane Balloy, Hugo Varet, Marie-Agnès Dillies, Caroline Proux, Bernd Jagla, Jean-Yves Coppée, Olivier Tabary, Harriet Corvol, Michel Chignard, Loïc Guillot
Published 2015-01-01

The transcriptional response of pathogenic Leptospira to peroxide reveals new defenses against infection-related oxidative stress.

by Crispin Zavala-Alvarado, Odile Sismeiro, Rachel Legendre, Hugo Varet, Giovanni Bussotti, Jan Bayram, Samuel G Huete, Guillaume Rey, Jean-Yves Coppée, Mathieu Picardeau, Nadia Benaroudj
Published 2020-10-01

Role of Hydrophobins in Aspergillus fumigatus

by Isabel Valsecchi, Vincent Dupres, Emmanuel Stephen-Victor, J. Iñaki Guijarro, John Gibbons, Rémi Beau, Jagadeesh Bayry, Jean-Yves Coppee, Frank Lafont, Jean-Paul Latgé, Anne Beauvais
Published 2017-12-01

BAHD1 haploinsufficiency results in anxiety-like phenotypes in male mice.

by Renaud Pourpre, Laurent Naudon, Hamid Meziane, Goran Lakisic, Luc Jouneau, Hugo Varet, Rachel Legendre, Olivia Wendling, Mohammed Selloum, Caroline Proux, Jean-Yves Coppée, Yann Herault, Hélène Bierne
Published 2020-01-01

Endoplasmic reticulum stress-sensing mechanism is activated in Entamoeba histolytica upon treatment with nitric oxide.

by Julien Santi-Rocca, Sherri Smith, Christian Weber, Erika Pineda, Chung-Chau Hon, Emma Saavedra, Alfonso Olivos-García, Sandrine Rousseau, Marie-Agnès Dillies, Jean-Yves Coppée, Nancy Guillén
Published 2012-01-01

Comparative analysis of viral RNA signatures on different RIG-I-like receptors

by Raul Y Sanchez David, Chantal Combredet, Odile Sismeiro, Marie-Agnès Dillies, Bernd Jagla, Jean-Yves Coppée, Marie Mura, Mathilde Guerbois Galla, Philippe Despres, Frédéric Tangy, Anastassia V Komarova
Published 2016-03-01

Plasmodium falciparum transcriptome analysis reveals pregnancy malaria associated gene expression.

by Nicaise Tuikue Ndam, Emmanuel Bischoff, Caroline Proux, Thomas Lavstsen, Ali Salanti, Juliette Guitard, Morten A Nielsen, Jean-Yves Coppée, Alioune Gaye, Thor Theander, Peter H David, Philippe Deloron
Published 2008-03-01

Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile.

by Olga A Soutourina, Marc Monot, Pierre Boudry, Laure Saujet, Christophe Pichon, Odile Sismeiro, Ekaterina Semenova, Konstantin Severinov, Chantal Le Bouguenec, Jean-Yves Coppée, Bruno Dupuy, Isabelle Martin-Verstraete
Published 2013-05-01

Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation

by Evelyne Krin, Sebastian Aguilar Pierlé, Odile Sismeiro, Bernd Jagla, Marie-Agnès Dillies, Hugo Varet, Oihane Irazoki, Susana Campoy, Zoé Rouy, Stéphane Cruveiller, Claudine Médigue, Jean-Yves Coppée, Didier Mazel
Published 2018-05-01

Mycobacterium abscessus virulence traits unraveled by transcriptomic profiling in amoeba and macrophages.

by Violaine Dubois, Alexandre Pawlik, Anouchka Bories, Vincent Le Moigne, Odile Sismeiro, Rachel Legendre, Hugo Varet, María Del Pilar Rodríguez-Ordóñez, Jean-Louis Gaillard, Jean-Yves Coppée, Roland Brosch, Jean-Louis Herrmann, Fabienne Girard-Misguich
Published 2019-11-01

Differences in gene transcriptomic pattern of Plasmodium falciparum in children with cerebral malaria and asymptomatic carriers.

by Talleh Almelli, Grégory Nuel, Emmanuel Bischoff, Agnès Aubouy, Mohamed Elati, Christian William Wang, Marie-Agnès Dillies, Jean-Yves Coppée, Georges Nko Ayissi, Leonardo Kishi Basco, Christophe Rogier, Nicaise Tuikue Ndam, Philippe Deloron, Rachida Tahar
Published 2014-01-01