GSMA: Gene Set Matrix Analysis, An Automated Method for Rapid Hypothesis Testing of Gene Expression Data

by Chris Cheadle, Tonya Watkins, Jinshui Fan, Marc A. Williams, Steven Georas, John Hall, Antony Rosen, Kathleen C. Barnes
Published 2007-01-01

TLR2 and TLR4 as Potential Biomarkers of Environmental Particulate Matter Exposed Human Myeloid Dendritic Cells

by Marc A. Williams, Chris Cheadle, Tonya Watkins, Anitaben Tailor, Smruti Killedar, Patrick Breysse, Kathleen C. Barnes, Steve N. Georas
Published 2007-01-01

Time-dependent c-Myc transactomes mapped by Array-based nuclear run-on reveal transcriptional modules in human B cells.

by Jinshui Fan, Karen Zeller, Yu-Chi Chen, Tonya Watkins, Kathleen C Barnes, Kevin G Becker, Chi V Dang, Chris Cheadle
Published 2010-03-01

GSMA: Gene Set Matrix Analysis, An Automated Method for Rapid Hypothesis Testing of Gene Expression Data

by Chris Cheadle Ph.D., CCR/NCI/NIH, Tonya Watkins, Jinshui Fan, Marc A. Williams, Steven Georas, John Hall, Antony Rosen, Kathleen C. Barnes
Published 2007-01-01

Sensitive detection of chromosomal segments of distinct ancestry in admixed populations.

by Alkes L Price, Arti Tandon, Nick Patterson, Kathleen C Barnes, Nicholas Rafaels, Ingo Ruczinski, Terri H Beaty, Rasika Mathias, David Reich, Simon Myers
Published 2009-06-01

Functional polymorphisms in IL13 are protective against high Schistosoma mansoni infection intensity in a Brazilian population.

by Audrey V Grant, Maria Ilma Araujo, Eduardo Vieira Ponte, Ricardo Riccio Oliveira, Peisong Gao, Alvaro A Cruz, Kathleen C Barnes, Terri H Beaty
Published 2012-01-01

Adaptive evolution of the FADS gene cluster within Africa.

by Rasika A Mathias, Wenqing Fu, Joshua M Akey, Hannah C Ainsworth, Dara G Torgerson, Ingo Ruczinski, Susan Sergeant, Kathleen C Barnes, Floyd H Chilton
Published 2012-01-01

FADS genetic variants and ω-6 polyunsaturated fatty acid metabolism in a homogeneous island population[S]

by Rasika A. Mathias, Candelaria Vergara, Li Gao, Nicholas Rafaels, Tracey Hand, Monica Campbell, Carol Bickel, Priscilla Ivester, Susan Sergeant, Kathleen C. Barnes, Floyd H. Chilton
Published 2010-09-01

The genetics of smoking in individuals with chronic obstructive pulmonary disease

by Ma’en Obeidat, Guohai Zhou, Xuan Li, Nadia N. Hansel, Nicholas Rafaels, Rasika Mathias, Ingo Ruczinski, Terri H. Beaty, Kathleen C. Barnes, Peter D. Paré, Don D. Sin
Published 2018-04-01

Aquaporin 5 polymorphisms and rate of lung function decline in chronic obstructive pulmonary disease.

by Nadia N Hansel, Venkataramana Sidhaye, Nicholas M Rafaels, Li Gao, Peisong Gao, Renaldo Williams, John E Connett, Terri H Beaty, Rasika A Mathias, Robert A Wise, Landon S King, Kathleen C Barnes
Published 2010-12-01

An IL-13 promoter polymorphism associated with liver fibrosis in patients with Schistosoma japonicum.

by Xin Long, Qian Chen, Jianping Zhao, Nicholas Rafaels, Priyanka Mathias, Huifang Liang, Joseph Potee, Monica Campbell, Bixiang Zhang, Li Gao, Steve N Georas, Donata Vercelli, Terri H Beaty, Ingo Ruczinski, Rasika Mathias, Kathleen C Barnes, Xiaoping Chen
Published 2015-01-01

Exome Sequencing of Phenotypic Extremes Identifies CAV2 and TMC6 as Interacting Modifiers of Chronic Pseudomonas aeruginosa Infection in Cystic Fibrosis.

by Mary J Emond, Tin Louie, Julia Emerson, Jessica X Chong, Rasika A Mathias, Michael R Knowles, Mark J Rieder, Holly K Tabor, Debbie A Nickerson, Kathleen C Barnes, NHLBI GO Exome Sequencing Project, Lung Go, Ronald L Gibson, Michael J Bamshad
Published 2015-06-01

Correction: Exome Sequencing of Phenotypic Extremes Identifies CAV2 and TMC6 as Interacting Modifiers of Chronic Pseudomonas aeruginosa Infection in Cystic Fibrosis.

by Mary J Emond, Tin Louie, Julia Emerson, Jessica X Chong, Rasika A Mathias, Michael R Knowles, Mark J Rieder, Holly K Tabor, Debbie A Nickerson, Kathleen C Barnes, NHLBI GO Exome Sequencing Project, Lung Go, Ronald L Gibson, Michael J Bamshad
Published 2015-08-01

Critical Role for Mast Cell Stat5 Activity in Skin Inflammation

by Tomoaki Ando, Wenbin Xiao, Peisong Gao, Siavash Namiranian, Kenji Matsumoto, Yoshiaki Tomimori, Hong Hong, Hirotaka Yamashita, Miho Kimura, Jun-ichi Kashiwakura, Tissa R. Hata, Kenji Izuhara, Michael F. Gurish, Axel Roers, Nicholas M. Rafaels, Kathleen C. Barnes, Colin Jamora, Yuko Kawakami, Toshiaki Kawakami
Published 2014-01-01

Erythroid-specific transcriptional changes in PBMCs from pulmonary hypertension patients.

by Chris Cheadle, Alan E Berger, Stephen C Mathai, Dmitry N Grigoryev, Tonya N Watkins, Yumiko Sugawara, Sangjucta Barkataki, Jinshui Fan, Meher Boorgula, Laura Hummers, Ari L Zaiman, Reda Girgis, Michael A McDevitt, Roger A Johns, Frederick Wigley, Kathleen C Barnes, Paul M Hassoun
Published 2012-01-01

Challenges and disparities in the application of personalized genomic medicine to populations with African ancestry

by Michael D. Kessler, Laura Yerges-Armstrong, Margaret A. Taub, Amol C. Shetty, Kristin Maloney, Linda Jo Bone Jeng, Ingo Ruczinski, Albert M. Levin, L. Keoki Williams, Terri H. Beaty, Rasika A. Mathias, Kathleen C. Barnes, Consortium on Asthma among African-ancestry Populations in the Americas (CAAPA), Timothy D. O’Connor
Published 2016-10-01

Prenatal tobacco smoke exposure is associated with childhood DNA CpG methylation.

by Carrie V Breton, Kimberly D Siegmund, Bonnie R Joubert, Xinhui Wang, Weiliang Qui, Vincent Carey, Wenche Nystad, Siri E Håberg, Carole Ober, Dan Nicolae, Kathleen C Barnes, Fernando Martinez, Andy Liu, Robert Lemanske, Robert Strunk, Scott Weiss, Stephanie London, Frank Gilliland, Benjamin Raby, Asthma BRIDGE consortium
Published 2014-01-01

Genome wide association identifies PPFIA1 as a candidate gene for acute lung injury risk following major trauma.

by Jason D Christie, Mark M Wurfel, Rui Feng, Grant E O'Keefe, Jonathan Bradfield, Lorraine B Ware, David C Christiani, Carolyn S Calfee, Mitchell J Cohen, Michael Matthay, Nuala J Meyer, Cecilia Kim, Mingyao Li, Joshua Akey, Kathleen C Barnes, Jonathan Sevransky, Paul N Lanken, Addison K May, Richard Aplenc, James P Maloney, Hakon Hakonarson, Trauma ALI SNP Consortium (TASC) investigators
Published 2012-01-01

Integration of mouse and human genome-wide association data identifies KCNIP4 as an asthma gene.

by Blanca E Himes, Keith Sheppard, Annerose Berndt, Adriana S Leme, Rachel A Myers, Christopher R Gignoux, Albert M Levin, W James Gauderman, James J Yang, Rasika A Mathias, Isabelle Romieu, Dara G Torgerson, Lindsey A Roth, Scott Huntsman, Celeste Eng, Barbara Klanderman, John Ziniti, Jody Senter-Sylvia, Stanley J Szefler, Robert F Lemanske, Robert S Zeiger, Robert C Strunk, Fernando D Martinez, Homer Boushey, Vernon M Chinchilli, Elliot Israel, David Mauger, Gerard H Koppelman, Dirkje S Postma, Maartje A E Nieuwenhuis, Judith M Vonk, John J Lima, Charles G Irvin, Stephen P Peters, Michiaki Kubo, Mayumi Tamari, Yusuke Nakamura, Augusto A Litonjua, Kelan G Tantisira, Benjamin A Raby, Eugene R Bleecker, Deborah A Meyers, Stephanie J London, Kathleen C Barnes, Frank D Gilliland, L Keoki Williams, Esteban G Burchard, Dan L Nicolae, Carole Ober, Dawn L DeMeo, Edwin K Silverman, Beverly Paigen, Gary Churchill, Steve D Shapiro, Scott T Weiss
Published 2013-01-01

Association study in African-admixed populations across the Americas recapitulates asthma risk loci in non-African populations

by Michelle Daya, Nicholas Rafaels, Tonya M. Brunetti, Sameer Chavan, Albert M. Levin, Aniket Shetty, Christopher R. Gignoux, Meher Preethi Boorgula, Genevieve Wojcik, Monica Campbell, Candelaria Vergara, Dara G. Torgerson, Victor E. Ortega, Ayo Doumatey, Henry Richard Johnston, Nathalie Acevedo, Maria Ilma Araujo, Pedro C. Avila, Gillian Belbin, Eugene Bleecker, Carlos Bustamante, Luis Caraballo, Alvaro Cruz, Georgia M. Dunston, Celeste Eng, Mezbah U. Faruque, Trevor S. Ferguson, Camila Figueiredo, Jean G. Ford, Weiniu Gan, Pierre-Antoine Gourraud, Nadia N. Hansel, Ryan D. Hernandez, Edwin Francisco Herrera-Paz, Silvia Jiménez, Eimear E. Kenny, Jennifer Knight-Madden, Rajesh Kumar, Leslie A. Lange, Ethan M. Lange, Antoine Lizee, Pissamai Maul, Trevor Maul, Alvaro Mayorga, Deborah Meyers, Dan L. Nicolae, Timothy D. O’Connor, Ricardo Riccio Oliveira, Christopher O. Olopade, Olufunmilayo Olopade, Zhaohui S. Qin, Charles Rotimi, Nicolas Vince, Harold Watson, Rainford J. Wilks, James G. Wilson, Steven Salzberg, Carole Ober, Esteban G. Burchard, L. Keoki Williams, Terri H. Beaty, Margaret A. Taub, Ingo Ruczinski, Rasika A. Mathias, Kathleen C. Barnes, CAAPA
Published 2019-02-01