Using DIVAN to assess disease/trait-associated single nucleotide variants in genome-wide scale

by Li Chen, Zhaohui S. Qin
Published 2017-10-01

Exploring the Cooccurrence Patterns of Multiple Sets of Genomic Intervals

by Hao Wu, Zhaohui S. Qin
Published 2013-01-01

Statistical Issues in the Analysis of ChIP-Seq and RNA-Seq Data

by Debashis Ghosh, Zhaohui S. Qin
Published 2010-09-01

Query large scale microarray compendium datasets using a model-based bayesian approach with variable selection.

by Ming Hu, Zhaohui S Qin
Published 2009-01-01

An Integrated System Biology Approach Yields Drug Repositioning Candidates for the Treatment of Heart Failure

by Guodong Yang, Guodong Yang, Aiqun Ma, Zhaohui S. Qin
Published 2019-09-01

Systematic Evaluation of DNA Sequence Variations on in vivo Transcription Factor Binding Affinity

by Yutong Jin, Jiahui Jiang, Ruixuan Wang, Zhaohui S. Qin
Published 2021-09-01

Proceedings of the 2019 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference

by Jonathan D. Wren, Yongsheng Bai, Zhaohui S. Qin, Da Yan, Ramin Homayouni
Published 2020-07-01

DeconPeaker, a Deconvolution Model to Identify Cell Types Based on Chromatin Accessibility in ATAC-Seq Data of Mixture Samples

by Huamei Li, Amit Sharma, Kun Luo, Zhaohui S. Qin, Xiao Sun, Hongde Liu
Published 2020-06-01

One Size Doesn't Fit All - RefEditor: Building Personalized Diploid Reference Genome to Improve Read Mapping and Genotype Calling in Next Generation Sequencing Studies.

by Shuai Yuan, H Richard Johnston, Guosheng Zhang, Yun Li, Yi-Juan Hu, Zhaohui S Qin
Published 2015-08-01

Pan-cancer analysis of pathway-based gene expression pattern at the individual level reveals biomarkers of clinical prognosis

by Kenong Su, Qi Yu, Ronglai Shen, Shi-Yong Sun, Carlos S. Moreno, Xiaoxian Li, Zhaohui S. Qin
Published 2021-08-01

The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data

by Sandeep J. Joseph, Ben Li, Robert A. Petit III, Zhaohui S. Qin, Lyndsey Darrow, Timothy D. Read
Published 2016-10-01

Direct amplification, sequencing and profiling of Chlamydia trachomatis strains in single and mixed infection clinical samples.

by Sandeep J Joseph, Ben Li, Tanvi Ghonasgi, Chad P Haase, Zhaohui S Qin, Deborah Dean, Timothy D Read
Published 2014-01-01

Heat Shock Protein Beta-1 Modifies Anterior to Posterior Purkinje Cell Vulnerability in a Mouse Model of Niemann-Pick Type C Disease.

by Chan Chung, Matthew J Elrick, James M Dell'Orco, Zhaohui S Qin, Shanker Kalyana-Sundaram, Arul M Chinnaiyan, Vikram G Shakkottai, Andrew P Lieberman
Published 2016-05-01

Author Correction: Truncation of mutant huntingtin in knock-in mice demonstrates exon1 huntingtin is a key pathogenic form

by Huiming Yang, Su Yang, Liang Jing, Luoxiu Huang, Luxiao Chen, Xianxian Zhao, Weili Yang, Yongcheng Pan, Peng Yin, Zhaohui S Qin, Beisha Tang, Shihua Li, Xiao-Jiang Li
Published 2020-11-01

Truncation of mutant huntingtin in knock-in mice demonstrates exon1 huntingtin is a key pathogenic form

by Huiming Yang, Su Yang, Liang Jing, Luoxiu Huang, Luxiao Chen, Xianxian Zhao, Weili Yang, Yongcheng Pan, Peng Yin, Zhaohui S Qin, Beisha Tang, Shihua Li, Xiao-Jiang Li
Published 2020-05-01

Integrated Analysis of Whole-Genome Paired-End and Mate-Pair Sequencing Data for Identifying Genomic Structural Variations in Multiple Myeloma

by Rendong Yang, Li Chen, Scott Newman, Khanjan Gandhi, Gregory Doho, Carlos S. Moreno, Paula M. Vertino, Leon Bernal-Mizarchi, Sagar Lonial, Lawrence H. Boise, Michael Rossi, Jeanne Kowalski, Zhaohui S. Qin
Published 2014-01-01

Integrated Analysis of Whole-Genome Paired-End and Mate-Pair Sequencing Data for Identifying Genomic Structural Variations in Multiple Myeloma

by Rendong Yang, Li Chen, Scott Newman, Khanjan Gandhi, Gregory Doho, Carlos S. Moreno, Paula M. Vertino, Leon Bernal-Mizarchi, Sagar Lonial, Lawrence H. Boise, Michael Rossi, Jeanne Kowalski, Zhaohui S. Qin
Published 2014-09-01

A machine learning approach to brain epigenetic analysis reveals kinases associated with Alzheimer’s disease

by Yanting Huang, Xiaobo Sun, Huige Jiang, Shaojun Yu, Chloe Robins, Matthew J. Armstrong, Ronghua Li, Zhen Mei, Xiaochuan Shi, Ekaterina Sergeevna Gerasimov, Philip L. De Jager, David A. Bennett, Aliza P. Wingo, Peng Jin, Thomas S. Wingo, Zhaohui S. Qin
Published 2021-07-01

Signatures of somatic mutations and gene expression from p16INK4A positive head and neck squamous cell carcinomas (HNSCC).

by Nabil F Saba, Ashok R Dinasarapu, Kelly R Magliocca, Bhakti Dwivedi, Sandra Seby, Zhaohui S Qin, Mihir Patel, Christopher C Griffith, Xu Wang, Mark El-Deiry, Conor Ernst Steuer, Jeanne Kowalski, Dong Moon Shin, Michael E Zwick, Zhuo Georgia Chen
Published 2020-01-01

Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment

by Vishnu Dileep, Korey A. Wilson, Claire Marchal, Xiaowen Lyu, Peiyao A. Zhao, Ben Li, Axel Poulet, Daniel A. Bartlett, Juan Carlos Rivera-Mulia, Zhaohui S. Qin, Allan J. Robins, Thomas C. Schulz, Michael J. Kulik, Rachel Patton McCord, Job Dekker, Stephen Dalton, Victor G. Corces, David M. Gilbert
Published 2019-07-01