A Matter of Taste: Lineage-Specific Loss of Function of Taste Receptor Genes in Vertebrates

by Marco Antinucci, Davide Risso
Published 2017-11-01

Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference [version 1; referees: 1 approved, 2 approved with r...

by Fanny Perraudeau, Davide Risso, Kelly Street, Elizabeth Purdom, Sandrine Dudoit
Published 2017-07-01

Assessment of statistical methods from single cell, bulk RNA-seq, and metagenomics applied to microbiome data

by Matteo Calgaro, Chiara Romualdi, Levi Waldron, Davide Risso, Nicola Vitulo
Published 2020-08-01

Editorial: Multi-omic Data Integration in Oncology

by Francesca Finotello, Enrica Calura, Davide Risso, Sampsa Hautaniemi, Chiara Romualdi
Published 2020-09-01

Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data

by Davide Risso, Fanny Perraudeau, Svetlana Gribkova, Sandrine Dudoit, Jean-Philippe Vert
Published 2019-02-01

A general and flexible method for signal extraction from single-cell RNA-seq data

by Davide Risso, Fanny Perraudeau, Svetlana Gribkova, Sandrine Dudoit, Jean-Philippe Vert
Published 2018-01-01

mbkmeans: Fast clustering for single cell data using mini-batch k-means.

by Stephanie C Hicks, Ruoxi Liu, Yuwei Ni, Elizabeth Purdom, Davide Risso
Published 2021-01-01

Potential Valorization of Hazelnut Shells through Extraction, Purification and Structural Characterization of Prebiotic Compounds: A Critical Review

by Andrea Fuso, Davide Risso, Ginevra Rosso, Franco Rosso, Federica Manini, Ileana Manera, Augusta Caligiani
Published 2021-05-01

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.

by Davide Risso, Liam Purvis, Russell B Fletcher, Diya Das, John Ngai, Sandrine Dudoit, Elizabeth Purdom
Published 2018-09-01

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

by Kelly Street, Davide Risso, Russell B. Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit
Published 2018-06-01

Estimating Sampling Selection Bias in Human Genetics: A Phenomenological Approach.

by Davide Risso, Luca Taglioli, Sergio De Iasio, Paola Gueresi, Guido Alfani, Sergio Nelli, Paolo Rossi, Giorgio Paoli, Sergio Tofanelli
Published 2015-01-01

Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex

by Jason R. Gerstner, John N. Koberstein, Adam J. Watson, Nikolai Zapero, Davide Risso, Terence P. Speed, Marcos G. Frank, Lucia Peixoto
Published 2016-10-01

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

by Koen Van den Berge, Fanny Perraudeau, Charlotte Soneson, Michael I. Love, Davide Risso, Jean-Philippe Vert, Mark D. Robinson, Sandrine Dudoit, Lieven Clement
Published 2018-02-01

Shank3 modulates sleep and expression of circadian transcription factors

by Ashley M Ingiosi, Hannah Schoch, Taylor Wintler, Kristan G Singletary, Dario Righelli, Leandro G Roser, Elizabeth Medina, Davide Risso, Marcos G Frank, Lucia Peixoto
Published 2019-04-01

Complementary networks of cortical somatostatin interneurons enforce layer specific control

by Alexander Naka, Julia Veit, Ben Shababo, Rebecca K Chance, Davide Risso, David Stafford, Benjamin Snyder, Andrew Egladyous, Desiree Chu, Savitha Sridharan, Daniel P Mossing, Liam Paninski, John Ngai, Hillel Adesnik
Published 2019-03-01

An African-specific haplotype in MRGPRX4 is associated with menthol cigarette smoking.

by Julia Kozlitina, Davide Risso, Katherine Lansu, Reid Hans Johnson Olsen, Eduardo Sainz, Donata Luiselli, Arnab Barik, Carlos Frigerio-Domingues, Luca Pagani, Stephen Wooding, Thomas Kirchner, Ray Niaura, Bryan Roth, Dennis Drayna
Published 2019-02-01

Food labeling issues for severe food allergic patients

by Alessandro Fiocchi, MD, Davide Risso, PhD, Audrey DunnGalvin, PhD, Sandra N. González Díaz, MD, PhD, Linda Monaci, PhD, Vincenzo Fierro, MD, Ignacio J. Ansotegui, MD, PhD
Published 2021-10-01

A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain

by Anoushka Joglekar, Andrey Prjibelski, Ahmed Mahfouz, Paul Collier, Susan Lin, Anna Katharina Schlusche, Jordan Marrocco, Stephen R. Williams, Bettina Haase, Ashley Hayes, Jennifer G. Chew, Neil I. Weisenfeld, Man Ying Wong, Alexander N. Stein, Simon A. Hardwick, Toby Hunt, Qi Wang, Christoph Dieterich, Zachary Bent, Olivier Fedrigo, Steven A. Sloan, Davide Risso, Erich D. Jarvis, Paul Flicek, Wenjie Luo, Geoffrey S. Pitt, Adam Frankish, August B. Smit, M. Elizabeth Ross, Hagen U. Tilgner
Published 2021-01-01