Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference [version 1; referees: 1 approved, 2 approved with r...

by Fanny Perraudeau, Davide Risso, Kelly Street, Elizabeth Purdom, Sandrine Dudoit
Published 2017-07-01

Publisher Correction: A general and flexible method for signal extraction from single-cell RNA-seq data

by Davide Risso, Fanny Perraudeau, Svetlana Gribkova, Sandrine Dudoit, Jean-Philippe Vert
Published 2019-02-01

A general and flexible method for signal extraction from single-cell RNA-seq data

by Davide Risso, Fanny Perraudeau, Svetlana Gribkova, Sandrine Dudoit, Jean-Philippe Vert
Published 2018-01-01

FiberGrowth Pipeline: A Framework Toward Predicting Fiber-Specific Growth From Human Gut Bacteroidetes Genomes

by Bénédicte Colnet, Bénédicte Colnet, Christian M. K. Sieber, Fanny Perraudeau, Marion Leclerc
Published 2021-10-01

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications

by Koen Van den Berge, Fanny Perraudeau, Charlotte Soneson, Michael I. Love, Davide Risso, Jean-Philippe Vert, Mark D. Robinson, Sandrine Dudoit, Lieven Clement
Published 2018-02-01

Improvements to postprandial glucose control in subjects with type 2 diabetes: a multicenter, double blind, randomized placebo-controlled trial of a novel probiotic formulation

by Fanny Perraudeau, Paul McMurdie, James Bullard, Colleen Cutcliffe, Achal Deo, John Eid, Jessica Gines, Mohan Iyer, Nicholas Justice, Wesley T Loo, Madeleine Nemchek, Marcus Schicklberger, Michael Souza, Brendon Stoneburner, Surabhi Tyagi, Orville Kolterman
Published 2020-04-01