CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes

by Dave J. Baker, Alp Aydin, Thanh Le-Viet, Gemma L. Kay, Steven Rudder, Leonardo de Oliveira Martins, Ana P. Tedim, Anastasia Kolyva, Maria Diaz, Nabil-Fareed Alikhan, Lizzie Meadows, Andrew Bell, Ana Victoria Gutierrez, Alexander J. Trotter, Nicholas M. Thomson, Rachel Gilroy, Luke Griffith, Evelien M. Adriaenssens, Rachael Stanley, Ian G. Charles, Ngozi Elumogo, John Wain, Reenesh Prakash, Emma Meader, Alison E. Mather, Mark A. Webber, Samir Dervisevic, Andrew J. Page, Justin O’Grady
Published 2021-02-01

Unravelling the specificity and mechanism of sialic acid recognition by the gut symbiont Ruminococcus gnavus

by C. David Owen, Louise E. Tailford, Serena Monaco, Tanja Šuligoj, Laura Vaux, Romane Lallement, Zahra Khedri, Hai Yu, Karine Lecointe, John Walshaw, Sandra Tribolo, Marc Horrex, Andrew Bell, Xi Chen, Gary L. Taylor, Ajit Varki, Jesus Angulo, Nathalie Juge
Published 2017-12-01

Ecological niche adaptation of Salmonella Typhimurium U288 is associated with altered pathogenicity and reduced zoonotic potential

by Mark Kirkwood, Prerna Vohra, Matt Bawn, Gaëtan Thilliez, Hannah Pye, Jennifer Tanner, Cosmin Chintoan-Uta, Priscilla Branchu, Liljana Petrovska, Timothy Dallman, Neil Hall, Mark P. Stevens, Robert A. Kingsley
Published 2021-04-01

An optimised protocol for detection of SARS-CoV-2 in stool

by Tianqi Li, Enriqueta Garcia-Gutierrez, Daniel A. Yara, Jacob Scadden, Jade Davies, Chloe Hutchins, Alp Aydin, Justin O’Grady, Arjan Narbad, Stefano Romano, Lizbeth Sayavedra
Published 2021-09-01

Exposure of Salmonella biofilms to antibiotic concentrations rapidly selects resistance with collateral tradeoffs

by Eleftheria Trampari, Emma R. Holden, Gregory J. Wickham, Anuradha Ravi, Leonardo de Oliveira Martins, George M. Savva, Mark A. Webber
Published 2021-01-01

Bioengineering commensal bacteria-derived outer membrane vesicles for delivery of biologics to the gastrointestinal and respiratory tract

by Ana L. Carvalho, Sonia Fonseca, Ariadna Miquel-Clopés, Kathryn Cross, Khoon-S. Kok, Udo Wegmann, Katherine Gil-Cardoso, Eleanor G. Bentley, Sanaria H.M. Al Katy, Janine L. Coombes, Anja Kipar, Regis Stentz, James P. Stewart, Simon R. Carding
Published 2019-12-01

Antibiotic-induced disturbances of the gut microbiota result in accelerated breast tumor growth

by Alastair M. McKee, Benjamin M. Kirkup, Matthew Madgwick, Wesley J. Fowler, Christopher A. Price, Sally A. Dreger, Rebecca Ansorge, Kate A. Makin, Shabhonam Caim, Gwenaelle Le Gall, Jack Paveley, Charlotte Leclaire, Matthew Dalby, Cristina Alcon-Giner, Anna Andrusaite, Tzu-Yu Feng, Martina Di Modica, Tiziana Triulzi, Elda Tagliabue, Simon W.F. Milling, Katherine N. Weilbaecher, Melanie R. Rutkowski, Tamás Korcsmáros, Lindsay J. Hall, Stephen D. Robinson
Published 2021-09-01

Microbiota Supplementation with Bifidobacterium and Lactobacillus Modifies the Preterm Infant Gut Microbiota and Metabolome: An Observational Study

by Cristina Alcon-Giner, Matthew J. Dalby, Shabhonam Caim, Jennifer Ketskemety, Alex Shaw, Kathleen Sim, Melissa A.E. Lawson, Raymond Kiu, Charlotte Leclaire, Lisa Chalklen, Magdalena Kujawska, Suparna Mitra, Fahmina Fardus-Reid, Gustav Belteki, Katherine McColl, Jonathan R. Swann, J. Simon Kroll, Paul Clarke, Lindsay J. Hall
Published 2020-08-01

The Uptake, Trafficking, and Biodistribution of Bacteroides thetaiotaomicron Generated Outer Membrane Vesicles

by Emily J. Jones, Catherine Booth, Sonia Fonseca, Aimee Parker, Kathryn Cross, Ariadna Miquel-Clopés, Isabelle Hautefort, Ulrike Mayer, Tom Wileman, Tom Wileman, Régis Stentz, Simon R. Carding, Simon R. Carding
Published 2020-02-01

<i>Bifidobacterium breve</i> UCC2003 Exopolysaccharide Modulates the Early Life Microbiota by Acting as a Potential Dietary Substrate

by Deborah Püngel, Agatha Treveil, Matthew J Dalby, Shabhonam Caim, Ian J Colquhoun, Catherine Booth, Jennifer Ketskemety, Tamas Korcsmaros, Douwe van Sinderen, Melissa AE Lawson, Lindsay J Hall
Published 2020-03-01

Meta-analysis of the Parkinson’s disease gut microbiome suggests alterations linked to intestinal inflammation

by Stefano Romano, George M. Savva, Janis R. Bedarf, Ian G. Charles, Falk Hildebrand, Arjan Narbad
Published 2021-03-01

Regulation of Enteroendocrine Cell Networks by the Major Human Gut Symbiont Bacteroides thetaiotaomicron

by Amisha Modasia, Aimee Parker, Emily Jones, Regis Stentz, Arlaine Brion, Andrew Goldson, Marianne Defernez, Tom Wileman, Tom Wileman, L. Ashley Blackshaw, Simon R. Carding, Simon R. Carding
Published 2020-11-01

LC3-Associated Phagocytosis Is Required for Dendritic Cell Inflammatory Cytokine Response to Gut Commensal Yeast Saccharomyces cerevisiae

by Dimitra Lamprinaki, Gemma Beasy, Aleksandra Zhekova, Alexandra Wittmann, Steve James, Jo Dicks, Yoichiro Iwakura, Shinobu Saijo, Xiaomin Wang, Chung-Wai Chow, Ian Roberts, Tamas Korcsmaros, Tamas Korcsmaros, Tamas Korcsmaros, Ulrike Mayer, Thomas Wileman, Thomas Wileman, Norihito Kawasaki
Published 2017-10-01

Preterm Infants Harbour a Rapidly Changing Mycobiota That Includes <i>Candida</i> Pathobionts

by Stephen A. James, Sarah Phillips, Andrea Telatin, David Baker, Rebecca Ansorge, Paul Clarke, Lindsay J. Hall, Simon R. Carding
Published 2020-11-01

Optimising conditions for bioethanol production from rice husk and rice straw: effects of pre-treatment on liquor composition and fermentation inhibitors

by Jia Wu, Adam Elliston, Gwenaelle Le Gall, Ian J. Colquhoun, Samuel R. A. Collins, Ian P. Wood, Jo Dicks, Ian N. Roberts, Keith W. Waldron
Published 2018-03-01

Bifidobacterium breve UCC2003 Induces a Distinct Global Transcriptomic Program in Neonatal Murine Intestinal Epithelial Cells

by Raymond Kiu, Agatha Treveil, Lukas C. Harnisch, Shabhonam Caim, Charlotte Leclaire, Douwe van Sinderen, Tamas Korcsmaros, Lindsay J. Hall
Published 2020-07-01

Release of cell wall phenolic esters during hydrothermal pretreatment of rice husk and rice straw

by Jia Wu, Samuel R. A. Collins, Adam Elliston, Nikolaus Wellner, Jo Dicks, Ian N. Roberts, Keith W. Waldron
Published 2018-06-01

Bioethanol production from spent mushroom compost derived from chaff of millet and sorghum

by Peter Ryden, Maria-Nefeli Efthymiou, Teddy A. M. Tindyebwa, Adam Elliston, David R. Wilson, Keith W. Waldron, Pradeep K. Malakar
Published 2017-08-01

The Pregnancy and EARly Life study (PEARL) - a longitudinal study to understand how gut microbes contribute to maintaining health during pregnancy and early life

by Sarah Phillips, Rachel Watt, Thomas Atkinson, George M Savva, Antonietta Hayhoe, Lindsay J Hall, on behalf of the PEARL study team
Published 2021-08-01

Human resident gut microbe Bacteroides thetaiotaomicron regulates colonic neuronal innervation and neurogenic function

by Rubina Aktar, Nabil Parkar, Regis Stentz, Lucas Baumard, Aimee Parker, Andrew Goldson, Arlaine Brion, Simon Carding, Ashley Blackshaw, Madusha Peiris
Published 2020-11-01