Probing Genomic Aspects of the Multi-Host Pathogen Clostridium perfringens Reveals Significant Pangenome Diversity, and a Diverse Array of Virulence Factors

by Raymond Kiu, Raymond Kiu, Shabhonam Caim, Sarah Alexander, Purnima Pachori, Lindsay J. Hall
Published 2017-12-01

Bifidobacterium breve UCC2003 Induces a Distinct Global Transcriptomic Program in Neonatal Murine Intestinal Epithelial Cells

by Raymond Kiu, Agatha Treveil, Lukas C. Harnisch, Shabhonam Caim, Charlotte Leclaire, Douwe van Sinderen, Tamas Korcsmaros, Lindsay J. Hall
Published 2020-07-01

Genomic analysis on broiler-associated Clostridium perfringens strains and exploratory caecal microbiome investigation reveals key factors linked to poultry necrotic enteritis

by Raymond Kiu, Joseph Brown, Harley Bedwell, Charlotte Leclaire, Shabhonam Caim, Derek Pickard, Gordon Dougan, Ronald A. Dixon, Lindsay J. Hall
Published 2019-10-01

Optimisation of 16S rRNA gut microbiota profiling of extremely low birth weight infants

by Cristina Alcon-Giner, Shabhonam Caim, Suparna Mitra, Jennifer Ketskemety, Udo Wegmann, John Wain, Gusztav Belteki, Paul Clarke, Lindsay J. Hall
Published 2017-11-01

<i>Bifidobacterium breve</i> UCC2003 Exopolysaccharide Modulates the Early Life Microbiota by Acting as a Potential Dietary Substrate

by Deborah Püngel, Agatha Treveil, Matthew J Dalby, Shabhonam Caim, Ian J Colquhoun, Catherine Booth, Jennifer Ketskemety, Tamas Korcsmaros, Douwe van Sinderen, Melissa AE Lawson, Lindsay J Hall
Published 2020-03-01

Streaming histogram sketching for rapid microbiome analytics

by Will PM Rowe, Anna Paola Carrieri, Cristina Alcon-Giner, Shabhonam Caim, Alex Shaw, Kathleen Sim, J. Simon Kroll, Lindsay J. Hall, Edward O. Pyzer-Knapp, Martyn D. Winn
Published 2019-03-01

Correction to: Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches

by Sharon A. Huws, Joan E. Edwards, Wanchang Lin, Francesco Rubino, Mark Alston, David Swarbreck, Shabhonam Caim, Pauline Rees Stevens, Justin Pachebat, Mi-Young Won, Linda B. Oyama, Christopher J. Creevey, Alison H. Kingston-Smith
Published 2021-08-01

Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches

by Sharon A. Huws, Joan E. Edwards, Wanchang Lin, Francesco Rubino, Mark Alston, David Swarbreck, Shabhonam Caim, Pauline Rees Stevens, Justin Pachebat, Mi-Young Won, Linda B. Oyama, Christopher J. Creevey, Alison H. Kingston-Smith
Published 2021-06-01

Microbiota Supplementation with Bifidobacterium and Lactobacillus Modifies the Preterm Infant Gut Microbiota and Metabolome: An Observational Study

by Cristina Alcon-Giner, Matthew J. Dalby, Shabhonam Caim, Jennifer Ketskemety, Alex Shaw, Kathleen Sim, Melissa A.E. Lawson, Raymond Kiu, Charlotte Leclaire, Lisa Chalklen, Magdalena Kujawska, Suparna Mitra, Fahmina Fardus-Reid, Gustav Belteki, Katherine McColl, Jonathan R. Swann, J. Simon Kroll, Paul Clarke, Lindsay J. Hall
Published 2020-08-01

Antibiotic-induced disturbances of the gut microbiota result in accelerated breast tumor growth

by Alastair M. McKee, Benjamin M. Kirkup, Matthew Madgwick, Wesley J. Fowler, Christopher A. Price, Sally A. Dreger, Rebecca Ansorge, Kate A. Makin, Shabhonam Caim, Gwenaelle Le Gall, Jack Paveley, Charlotte Leclaire, Matthew Dalby, Cristina Alcon-Giner, Anna Andrusaite, Tzu-Yu Feng, Martina Di Modica, Tiziana Triulzi, Elda Tagliabue, Simon W.F. Milling, Katherine N. Weilbaecher, Melanie R. Rutkowski, Tamás Korcsmáros, Lindsay J. Hall, Stephen D. Robinson
Published 2021-09-01