Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data

by Kosai Al-Nakeeb, Thomas Nordahl Petersen, Thomas Sicheritz-Pontén
Published 2017-11-01

Microbiota in foods from Inuit traditional hunting.

by Aviaja L Hauptmann, Petronela Paulová, Lars Hestbjerg Hansen, Thomas Sicheritz-Pontén, Gert Mulvad, Dennis S Nielsen
Published 2020-01-01

Transcriptome and genome size analysis of the Venus flytrap.

by Michael Krogh Jensen, Josef Korbinian Vogt, Simon Bressendorff, Andaine Seguin-Orlando, Morten Petersen, Thomas Sicheritz-Pontén, John Mundy
Published 2015-01-01

Correction: MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.

by Thomas Nordahl Petersen, Oksana Lukjancenko, Martin Christen Frølund Thomsen, Maria Maddalena Sperotto, Ole Lund, Frank Møller Aarestrup, Thomas Sicheritz-Pontén
Published 2017-01-01

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.

by Thomas Nordahl Petersen, Oksana Lukjancenko, Martin Christen Frølund Thomsen, Maria Maddalena Sperotto, Ole Lund, Frank Møller Aarestrup, Thomas Sicheritz-Pontén
Published 2017-01-01

Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

by Marie Lisandra Zepeda Mendoza, Michael Roggenbuck, Karla Manzano Vargas, Lars Hestbjerg Hansen, Søren Brunak, M. Thomas P. Gilbert, Thomas Sicheritz-Pontén
Published 2018-10-01

Analysis of Selection Methods to Develop Novel Phage Therapy Cocktails Against Antimicrobial Resistant Clinical Isolates of Bacteria

by Melissa E. K. Haines, Francesca E. Hodges, Janet Y. Nale, Jennifer Mahony, Douwe van Sinderen, Joanna Kaczorowska, Bandar Alrashid, Bandar Alrashid, Mahmuda Akter, Nathan Brown, Dominic Sauvageau, Thomas Sicheritz-Pontén, Thomas Sicheritz-Pontén, Anisha M. Thanki, Andrew D. Millard, Edouard E. Galyov, Martha R. J. Clokie
Published 2021-03-01

Hybridization capture using short PCR products enriches small genomes by capturing flanking sequences (CapFlank).

by Kyriakos Tsangaras, Nathan Wales, Thomas Sicheritz-Pontén, Simon Rasmussen, Johan Michaux, Yasuko Ishida, Serge Morand, Marie-Louise Kampmann, M Thomas P Gilbert, Alex D Greenwood
Published 2014-01-01

Upstream freshwater and terrestrial sources are differentially reflected in the bacterial community structure along a small Arctic river and its estuary

by Aviaja Lyberth Hauptmann, Aviaja Lyberth Hauptmann, Aviaja Lyberth Hauptmann, Thor Nygaard Markussen, Marek Stibal, Marek Stibal, Nikoline Stine Olsen, Bo Elberling, Jacob Bælum, Thomas Sicheritz-Pontén, Carsten Suhr Jacobsen, Carsten Suhr Jacobsen
Published 2016-09-01

Complete genes may pass from food to human blood.

by Sándor Spisák, Norbert Solymosi, Péter Ittzés, András Bodor, Dániel Kondor, Gábor Vattay, Barbara K Barták, Ferenc Sipos, Orsolya Galamb, Zsolt Tulassay, Zoltán Szállási, Simon Rasmussen, Thomas Sicheritz-Ponten, Søren Brunak, Béla Molnár, István Csabai
Published 2013-01-01

The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics

by Shyam Gopalakrishnan, Jose A. Samaniego Castruita, Mikkel-Holger S. Sinding, Lukas F. K. Kuderna, Jannikke Räikkönen, Bent Petersen, Thomas Sicheritz-Ponten, Greger Larson, Ludovic Orlando, Tomas Marques-Bonet, Anders J. Hansen, Love Dalén, M. Thomas P. Gilbert
Published 2017-06-01

Population genomics of grey wolves and wolf-like canids in North America.

by Mikkel-Holger S Sinding, Shyam Gopalakrishan, Filipe G Vieira, Jose A Samaniego Castruita, Katrine Raundrup, Mads Peter Heide Jørgensen, Morten Meldgaard, Bent Petersen, Thomas Sicheritz-Ponten, Johan Brus Mikkelsen, Ulf Marquard-Petersen, Rune Dietz, Christian Sonne, Love Dalén, Lutz Bachmann, Øystein Wiig, Anders J Hansen, M Thomas P Gilbert
Published 2018-11-01

Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers

by Jens Friis-Nielsen, Kristín Rós Kjartansdóttir, Sarah Mollerup, Maria Asplund, Tobias Mourier, Randi Holm Jensen, Thomas Arn Hansen, Alba Rey-Iglesia, Stine Raith Richter, Ida Broman Nielsen, David E. Alquezar-Planas, Pernille V. S. Olsen, Lasse Vinner, Helena Fridholm, Lars Peter Nielsen, Eske Willerslev, Thomas Sicheritz-Pontén, Ole Lund, Anders Johannes Hansen, Jose M. G. Izarzugaza, Søren Brunak
Published 2016-02-01

Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

by Rene S. Hendriksen, Patrick Munk, Patrick Njage, Bram van Bunnik, Luke McNally, Oksana Lukjancenko, Timo Röder, David Nieuwenhuijse, Susanne Karlsmose Pedersen, Jette Kjeldgaard, Rolf S. Kaas, Philip Thomas Lanken Conradsen Clausen, Josef Korbinian Vogt, Pimlapas Leekitcharoenphon, Milou G. M. van de Schans, Tina Zuidema, Ana Maria de Roda Husman, Simon Rasmussen, Bent Petersen, The Global Sewage Surveillance project consortium, Clara Amid, Guy Cochrane, Thomas Sicheritz-Ponten, Heike Schmitt, Jorge Raul Matheu Alvarez, Awa Aidara-Kane, Sünje J. Pamp, Ole Lund, Tine Hald, Mark Woolhouse, Marion P. Koopmans, Håkan Vigre, Thomas Nordahl Petersen, Frank M. Aarestrup
Published 2019-03-01

A low-gluten diet induces changes in the intestinal microbiome of healthy Danish adults

by Lea B. S. Hansen, Henrik M. Roager, Nadja B. Søndertoft, Rikke J. Gøbel, Mette Kristensen, Mireia Vallès-Colomer, Sara Vieira-Silva, Sabine Ibrügger, Mads V. Lind, Rasmus B. Mærkedahl, Martin I. Bahl, Mia L. Madsen, Jesper Havelund, Gwen Falony, Inge Tetens, Trine Nielsen, Kristine H. Allin, Henrik L. Frandsen, Bolette Hartmann, Jens Juul Holst, Morten H. Sparholt, Jesper Holck, Andreas Blennow, Janne Marie Moll, Anne S. Meyer, Camilla Hoppe, Jørgen H. Poulsen, Vera Carvalho, Domenico Sagnelli, Marlene D. Dalgaard, Anders F. Christensen, Magnus Christian Lydolph, Alastair B. Ross, Silas Villas-Bôas, Susanne Brix, Thomas Sicheritz-Pontén, Karsten Buschard, Allan Linneberg, Jüri J. Rumessen, Claus T. Ekstrøm, Christian Ritz, Karsten Kristiansen, H. Bjørn Nielsen, Henrik Vestergaard, Nils J. Færgeman, Jeroen Raes, Hanne Frøkiær, Torben Hansen, Lotte Lauritzen, Ramneek Gupta, Tine Rask Licht, Oluf Pedersen
Published 2018-11-01