Assessing DNA Sequence Alignment Methods for Characterizing Ancient Genomes and Methylomes

by Marine Poullet, Ludovic Orlando, Ludovic Orlando
Published 2020-05-01

Uncovering Signatures of DNA Methylation in Ancient Plant Remains From Patterns of Post-mortem DNA Damage

by Stefanie Wagner, Stefanie Wagner, Christophe Plomion, Ludovic Orlando, Ludovic Orlando
Published 2020-01-01

Origin and Evolution of Deleterious Mutations in Horses

by Ludovic Orlando, Pablo Librado
Published 2019-08-01

Using classical population genetics tools with heterochroneous data: time matters!

by Frantz Depaulis, Ludovic Orlando, Catherine Hänni
Published 2009-01-01

Mammoth and Elephant Phylogenetic Relationships: Mammut Americanum, the Missing Outgroup

by Ludovic Orlando, Catherine Hänni, Christophe J. Douady
Published 2007-01-01

Paleogenomics: reconstruction of plant evolutionary trajectories from modern and ancient DNA

by Caroline Pont, Stefanie Wagner, Antoine Kremer, Ludovic Orlando, Christophe Plomion, Jerome Salse
Published 2019-02-01

Unveiling the Ecological Applications of Ancient DNA From Mollusk Shells

by Clio Der Sarkissian, Per Möller, Courtney A. Hofman, Courtney A. Hofman, Peter Ilsøe, Torben C. Rick, Tom Schiøtte, Martin Vinther Sørensen, Love Dalén, Love Dalén, Ludovic Orlando, Ludovic Orlando
Published 2020-03-01

Annotation of the Protein Coding Regions of the Equine Genome.

by Matthew S Hestand, Theodore S Kalbfleisch, Stephen J Coleman, Zheng Zeng, Jinze Liu, Ludovic Orlando, James N MacLeod
Published 2015-01-01

Out of the Pacific and back again: insights into the matrilineal history of Pacific killer whale ecotypes.

by Andrew D Foote, Phillip A Morin, John W Durban, Eske Willerslev, Ludovic Orlando, M Thomas P Gilbert
Published 2011-01-01

Population Demography and Genetic Diversity in the Pleistocene Cave Lion

by Erik Ersmark, Ludovic Orlando, Edson Sandoval-Castellanos, Ian Barnes, Ross Barnett, Anthony Stuart, Adrian Lister, Love Dalén
Published 2015-03-01

Vibrio tapetis Displays an Original Type IV Secretion System in Strains Pathogenic for Bivalve Molluscs

by Graciela M. Dias, Graciela M. Dias, Adeline Bidault, Patrick Le Chevalier, Gwenaëlle Choquet, Clio Der Sarkissian, Ludovic Orlando, Ludovic Orlando, Claudine Medigue, Valerie Barbe, Sophie Mangenot, Cristiane C. Thompson, Fabiano L. Thompson, Annick Jacq, Vianney Pichereau, Christine Paillard
Published 2018-02-01

Comparison of the Equine Reference Sequence with Its Sanger Source Data and New Illumina Reads.

by Jovan Rebolledo-Mendez, Matthew S Hestand, Stephen J Coleman, Zheng Zeng, Ludovic Orlando, James N MacLeod, Ted Kalbfleisch
Published 2015-01-01

Genetic diversity, evolution and selection in the major histocompatibility complex DRB and DQB loci in the family Equidae

by Marie Klumplerova, Petra Splichalova, Jan Oppelt, Jan Futas, Aneta Kohutova, Petra Musilova, Svatava Kubickova, Roman Vodicka, Ludovic Orlando, Petr Horin
Published 2020-09-01

Ligation bias in illumina next-generation DNA libraries: implications for sequencing ancient genomes.

by Andaine Seguin-Orlando, Mikkel Schubert, Joel Clary, Julia Stagegaard, Maria T Alberdi, José Luis Prado, Alfredo Prieto, Eske Willerslev, Ludovic Orlando
Published 2013-01-01

No particular genomic features underpin the dramatic economic consequences of 17th century plague epidemics in Italy

by Andaine Seguin-Orlando, Caroline Costedoat, Clio Der Sarkissian, Stéfan Tzortzis, Célia Kamel, Norbert Telmon, Love Dalén, Catherine Thèves, Michel Signoli, Ludovic Orlando
Published 2021-04-01

Oral health status in historic population: Macroscopic and metagenomic evidence.

by Claire Willmann, Xavier Mata, Kristian Hanghoej, Laure Tonasso, Lenka Tisseyre, Céline Jeziorski, Elodie Cabot, Pierre Chevet, Eric Crubézy, Ludovic Orlando, Rémi Esclassan, Catherine Thèves
Published 2018-01-01

CASCADE: A Custom-Made Archiving System for the Conservation of Ancient DNA Experimental Data

by Dirk Dolle, Antoine Fages, Xavier Mata, Stéphanie Schiavinato, Laure Tonasso-Calvière, Lorelei Chauvey, Stefanie Wagner, Clio Der Sarkissian, Aurore Fromentier, Andaine Seguin-Orlando, Ludovic Orlando
Published 2020-06-01

Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals.

by Andrew D Foote, Philip Francis Thomsen, Signe Sveegaard, Magnus Wahlberg, Jos Kielgast, Line A Kyhn, Andreas B Salling, Anders Galatius, Ludovic Orlando, M Thomas P Gilbert
Published 2012-01-01

Early pastoral economies along the Ancient Silk Road: Biomolecular evidence from the Alay Valley, Kyrgyzstan.

by William Taylor, Svetlana Shnaider, Aida Abdykanova, Antoine Fages, Frido Welker, Franziska Irmer, Andaine Seguin-Orlando, Naveed Khan, Katerina Douka, Ksenia Kolobova, Ludovic Orlando, Andrei Krivoshapkin, Nicole Boivin
Published 2018-01-01

The microcephalin ancestral allele in a Neanderthal individual.

by Martina Lari, Ermanno Rizzi, Lucio Milani, Giorgio Corti, Carlotta Balsamo, Stefania Vai, Giulio Catalano, Elena Pilli, Laura Longo, Silvana Condemi, Paolo Giunti, Catherine Hänni, Gianluca De Bellis, Ludovic Orlando, Guido Barbujani, David Caramelli
Published 2010-05-01