Broad phylogenomic sampling and the sister lineage of land plants.

by Ruth E Timme, Tsvetan R Bachvaroff, Charles F Delwiche
Published 2012-01-01

Salmonella enterica Phylogeny Based on Whole-Genome Sequencing Reveals Two New Clades and Novel Patterns of Horizontally Acquired Genetic Elements

by Jay Worley, Jianghong Meng, Marc W. Allard, Eric W. Brown, Ruth E. Timme
Published 2018-11-01

Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens

by Ruth E. Timme, William J. Wolfgang, Maria Balkey, Sai Laxmi Gubbala Venkata, Robyn Randolph, Marc Allard, Errol Strain
Published 2020-10-01

An analysis of Echinacea chloroplast genomes: Implications for future botanical identification

by Ning Zhang, David L. Erickson, Padmini Ramachandran, Andrea R. Ottesen, Ruth E. Timme, Vicki A. Funk, Yan Luo, Sara M. Handy
Published 2017-03-01

The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica

by James B. Pettengill, Ruth E. Timme, Rodolphe Barrangou, Magaly Toro, Marc W. Allard, Errol Strain, Steven M. Musser, Eric W. Brown
Published 2014-04-01

Characterization of Vibrio parahaemolyticus clinical strains from Maryland (2012-2013) and comparisons to a locally and globally diverse V. parahaemolyticus strains by Whole-Genome...

by Julie eHaendiges, Ruth eTimme, Marc William Allard, Robert A Myers, Robert A Myers, Eric Wayne Brown, Narjol eGonzález-Escalona
Published 2015-02-01

Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

by Ruth E. Timme, Hugh Rand, Martin Shumway, Eija K. Trees, Mustafa Simmons, Richa Agarwala, Steven Davis, Glenn E. Tillman, Stephanie Defibaugh-Chavez, Heather A. Carleton, William A. Klimke, Lee S. Katz
Published 2017-10-01

Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates.

by Sara Lomonaco, Matthew A Crawford, Christine Lascols, Ruth E Timme, Kevin Anderson, David R Hodge, Debra J Fisher, Segaran P Pillai, Stephen A Morse, Erum Khan, Molly A Hughes, Marc W Allard, Shashi K Sharma
Published 2018-01-01

Genome-wide methylation patterns in Salmonella enterica Subsp. enterica Serovars.

by Cary Pirone-Davies, Maria Hoffmann, Richard J Roberts, Tim Muruvanda, Ruth E Timme, Errol Strain, Yan Luo, Justin Payne, Khai Luong, Yi Song, Yu-Chih Tsai, Matthew Boitano, Tyson A Clark, Jonas Korlach, Peter S Evans, Marc W Allard
Published 2015-01-01

Correction for Vangay et al., “Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities”

by Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V. Costes, Joan Damerow, William D. Duncan, Jose Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M. Galazka, Sean M. Gibbons, David Hays, Judson Hervey, Bin Hu, Bonnie L. Hurwitz, Pankaj Jaiswal, Marcin P. Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L. Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T. B. K. Reddy, Lorna Richardson, Simon Roux, Lynn M. Schriml, Justin P. Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R. Thompson, Ruth E. Timme, Jie Zheng, Elisha M. Wood-Charlson, Emiley A. Eloe-Fadrosh
Published 2021-06-01

Microbiome Metadata Standards: Report of the National Microbiome Data Collaborative’s Workshop and Follow-On Activities

by Pajau Vangay, Josephine Burgin, Anjanette Johnston, Kristen L. Beck, Daniel C. Berrios, Kai Blumberg, Shane Canon, Patrick Chain, John-Marc Chandonia, Danielle Christianson, Sylvain V. Costes, Joan Damerow, William D. Duncan, Jose Pablo Dundore-Arias, Kjiersten Fagnan, Jonathan M. Galazka, Sean M. Gibbons, David Hays, Judson Hervey, Bin Hu, Bonnie L. Hurwitz, Pankaj Jaiswal, Marcin P. Joachimiak, Linda Kinkel, Joshua Ladau, Stanton L. Martin, Lee Ann McCue, Kayd Miller, Nigel Mouncey, Chris Mungall, Evangelos Pafilis, T. B. K. Reddy, Lorna Richardson, Simon Roux, Lynn M. Schriml, Justin P. Shaffer, Jagadish Chandrabose Sundaramurthi, Luke R. Thompson, Ruth E. Timme, Jie Zheng, Elisha M. Wood-Charlson, Emiley A. Eloe-Fadrosh
Published 2021-02-01