Returning to more finished genomes

by Jonas Korlach
Published 2014-12-01

Genome annotation provides insight into carbon monoxide and hydrogen metabolism in Rubrivivax gelatinosus.

by Karen Wawrousek, Scott Noble, Jonas Korlach, Jin Chen, Carrie Eckert, Jianping Yu, Pin-Ching Maness
Published 2014-01-01

Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kinetic.

by Zhixing Feng, Gang Fang, Jonas Korlach, Tyson Clark, Khai Luong, Xuegong Zhang, Wing Wong, Eric Schadt
Published 2013-01-01

Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing

by Yu-Chih Tsai, Sean Conlan, Clayton Deming, Julia A. Segre, Heidi H. Kong, Jonas Korlach, Julia Oh
Published 2016-02-01

DNA Methylation Assessed by SMRT Sequencing Is Linked to Mutations in Neisseria meningitidis Isolates.

by Mohamad R Abdul Sater, Araceli Lamelas, Guilin Wang, Tyson A Clark, Katharina Röltgen, Shrikant Mane, Jonas Korlach, Gerd Pluschke, Christoph D Schmid
Published 2015-01-01

The Impact of Aminoglycosides on the Dynamics of Translation Elongation

by Albert Tsai, Sotaro Uemura, Magnus Johansson, Elisabetta Viani Puglisi, R. Andrew Marshall, Colin Echeverría Aitken, Jonas Korlach, Måns Ehrenberg, Joseph D. Puglisi
Published 2013-02-01

Novel giant siphovirus from Bacillus anthracis features unusual genome characteristics.

by Holly H Ganz, Christina Law, Martina Schmuki, Fritz Eichenseher, Richard Calendar, Martin J Loessner, Wayne M Getz, Jonas Korlach, Wolfgang Beyer, Jochen Klumpp
Published 2014-01-01

A High-Quality De novo Genome Assembly from a Single Mosquito Using PacBio Sequencing

by Sarah B. Kingan, Haynes Heaton, Juliana Cudini, Christine C. Lambert, Primo Baybayan, Brendan D. Galvin, Richard Durbin, Jonas Korlach, Mara K. N. Lawniczak
Published 2019-01-01

Comprehensive methylome characterization of Mycoplasma genitalium and Mycoplasma pneumoniae at single-base resolution.

by Maria Lluch-Senar, Khai Luong, Verónica Lloréns-Rico, Javier Delgado, Gang Fang, Kristi Spittle, Tyson A Clark, Eric Schadt, Stephen W Turner, Jonas Korlach, Luis Serrano
Published 2013-01-01

Structural and functional diversity among Type III restriction-modification systems that confer host DNA protection via methylation of the N4 atom of cytosine.

by Iain A Murray, Yvette A Luyten, Alexey Fomenkov, Nan Dai, Ivan R Corrêa, William G Farmerie, Tyson A Clark, Jonas Korlach, Richard D Morgan, Richard J Roberts
Published 2021-01-01

A High-Quality, Long-Read De Novo Genome Assembly to Aid Conservation of Hawaiiʻs Last Remaining Crow Species

by Jolene T. Sutton, Martin Helmkampf, Cynthia C. Steiner, M. Renee Bellinger, Jonas Korlach, Richard Hall, Primo Baybayan, Jill Muehling, Jenny Gu, Sarah Kingan, Bryce M. Masuda, Oliver A. Ryder
Published 2018-08-01

Identification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysis.

by Mary O' Connell Motherway, Debbie Watson, Francesca Bottacini, Tyson A Clark, Richard J Roberts, Jonas Korlach, Peggy Garault, Christian Chervaux, Johan E T van Hylckama Vlieg, Tamara Smokvina, Douwe van Sinderen
Published 2014-01-01

Identification of a Pseudomonas aeruginosa PAO1 DNA Methyltransferase, Its Targets, and Physiological Roles

by Sebastian Doberenz, Denitsa Eckweiler, Olga Reichert, Vanessa Jensen, Boyke Bunk, Cathrin Sproer, Adrian Kordes, Emanuela Frangipani, Khai Luong, Jonas Korlach, Stephan Heeb, Jorg Overmann, Volkhard Kaever, Susanne Haussler, Pascale F. Cossart
Published 2017-02-01

Genome-wide methylation patterns in Salmonella enterica Subsp. enterica Serovars.

by Cary Pirone-Davies, Maria Hoffmann, Richard J Roberts, Tim Muruvanda, Ruth E Timme, Errol Strain, Yan Luo, Justin Payne, Khai Luong, Yi Song, Yu-Chih Tsai, Matthew Boitano, Tyson A Clark, Jonas Korlach, Peter S Evans, Marc W Allard
Published 2015-01-01

Pacific Biosciences Sequencing and IMGT/HighV-QUEST Analysis of Full-Length Single Chain Fragment Variable from an In Vivo Selected Phage-Display Combinatorial Library

by Audrey Hemadou, Véronique Giudicelli, Melissa Laird Smith, Marie-Paule Lefranc, Patrice Duroux, Sofia Kossida, Cheryl Heiner, N. Lance Hepler, John Kuijpers, Alexis Groppi, Jonas Korlach, Philippe Mondon, Florence Ottones, Marie-Josée Jacobin-Valat, Jeanny Laroche-Traineau, Gisèle Clofent-Sanchez
Published 2017-12-01

The Epigenomic Landscape of Prokaryotes.

by Matthew J Blow, Tyson A Clark, Chris G Daum, Adam M Deutschbauer, Alexey Fomenkov, Roxanne Fries, Jeff Froula, Dongwan D Kang, Rex R Malmstrom, Richard D Morgan, Janos Posfai, Kanwar Singh, Axel Visel, Kelly Wetmore, Zhiying Zhao, Edward M Rubin, Jonas Korlach, Len A Pennacchio, Richard J Roberts
Published 2016-02-01

Sex chromosome evolution in parasitic nematodes of humans

by Jeremy M. Foster, Alexandra Grote, John Mattick, Alan Tracey, Yu-Chih Tsai, Matthew Chung, James A. Cotton, Tyson A. Clark, Adam Geber, Nancy Holroyd, Jonas Korlach, Yichao Li, Silvia Libro, Sara Lustigman, Michelle L. Michalski, Michael Paulini, Matthew B. Rogers, Laura Teigen, Alan Twaddle, Lonnie Welch, Matthew Berriman, Julie C. Dunning Hotopp, Elodie Ghedin
Published 2020-04-01

The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers

by Jason W. Sahl, Adam J. Vazquez, Carina M. Hall, Joseph D. Busch, Apichai Tuanyok, Mark Mayo, James M. Schupp, Madeline Lummis, Talima Pearson, Kenzie Shippy, Rebecca E. Colman, Christopher J. Allender, Vanessa Theobald, Derek S. Sarovich, Erin P. Price, Alex Hutcheson, Jonas Korlach, John J. LiPuma, Jason Ladner, Sean Lovett, Galina Koroleva, Gustavo Palacios, Direk Limmathurotsakul, Vanaporn Wuthiekanun, Gumphol Wongsuwan, Bart J. Currie, Paul Keim, David M. Wagner
Published 2016-09-01

Complete vertebrate mitogenomes reveal widespread repeats and gene duplications

by Giulio Formenti, Arang Rhie, Jennifer Balacco, Bettina Haase, Jacquelyn Mountcastle, Olivier Fedrigo, Samara Brown, Marco Rosario Capodiferro, Farooq O. Al-Ajli, Roberto Ambrosini, Peter Houde, Sergey Koren, Karen Oliver, Michelle Smith, Jason Skelton, Emma Betteridge, Jale Dolucan, Craig Corton, Iliana Bista, James Torrance, Alan Tracey, Jonathan Wood, Marcela Uliano-Silva, Kerstin Howe, Shane McCarthy, Sylke Winkler, Woori Kwak, Jonas Korlach, Arkarachai Fungtammasan, Daniel Fordham, Vania Costa, Simon Mayes, Matteo Chiara, David S. Horner, Eugene Myers, Richard Durbin, Alessandro Achilli, Edward L. Braun, Adam M. Phillippy, Erich D. Jarvis, The Vertebrate Genomes Project Consortium
Published 2021-04-01

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

by Shubha Vij, Heiner Kuhl, Inna S Kuznetsova, Aleksey Komissarov, Andrey A Yurchenko, Peter Van Heusden, Siddharth Singh, Natascha M Thevasagayam, Sai Rama Sridatta Prakki, Kathiresan Purushothaman, Jolly M Saju, Junhui Jiang, Stanley Kimbung Mbandi, Mario Jonas, Amy Hin Yan Tong, Sarah Mwangi, Doreen Lau, Si Yan Ngoh, Woei Chang Liew, Xueyan Shen, Lawrence S Hon, James P Drake, Matthew Boitano, Richard Hall, Chen-Shan Chin, Ramkumar Lachumanan, Jonas Korlach, Vladimir Trifonov, Marsel Kabilov, Alexey Tupikin, Darrell Green, Simon Moxon, Tyler Garvin, Fritz J Sedlazeck, Gregory W Vurture, Gopikrishna Gopalapillai, Vinaya Kumar Katneni, Tansyn H Noble, Vinod Scaria, Sridhar Sivasubbu, Dean R Jerry, Stephen J O'Brien, Michael C Schatz, Tamás Dalmay, Stephen W Turner, Si Lok, Alan Christoffels, László Orbán
Published 2016-04-01