Defining Microbiome Health through a Host Lens

by Sean M. Gibbons
Published 2019-05-01

The Built Environment Is a Microbial Wasteland

by Sean M. Gibbons
Published 2016-04-01

MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota

by Christian Diener, Sean M. Gibbons, Osbaldo Resendis-Antonio
Published 2020-01-01

Correcting for batch effects in case-control microbiome studies.

by Sean M Gibbons, Claire Duvallet, Eric J Alm
Published 2018-04-01

The Microbiome Stress Project: Toward a Global Meta-Analysis of Environmental Stressors and Their Effects on Microbial Communities

by Jennifer D. Rocca, Marie Simonin, Joanna R. Blaszczak, Joanna R. Blaszczak, Jessica G. Ernakovich, Sean M. Gibbons, Sean M. Gibbons, Sean M. Gibbons, Firas S. Midani, Alex D. Washburne, Alex D. Washburne
Published 2019-01-01

The role of macrobiota in structuring microbial communities along rocky shores

by Catherine A. Pfister, Jack A. Gilbert, Sean M. Gibbons
Published 2014-10-01

Two dynamic regimes in the human gut microbiome.

by Sean M Gibbons, Sean M Kearney, Chris S Smillie, Eric J Alm
Published 2017-02-01

Local Action with Global Impact: Highly Similar Infection Patterns of Human Viruses and Bacteriophages

by Rachelle Mariano, Sawsan Khuri, Peter Uetz, Stefan Wuchty, Sean M. Gibbons
Published 2016-03-01

Proximate grassland and shrub-encroached sites show dramatic restructuring of soil bacterial communities

by Xingjia Xiang, Sean M. Gibbons, He Li, Haihua Shen, Haiyan Chu
Published 2019-07-01

From taxonomy to metabolic output: what factors define gut microbiome health?

by Tomasz Wilmanski, Noa Rappaport, Christian Diener, Sean M. Gibbons, Nathan D. Price
Published 2021-01-01

Orthogonal Dietary Niche Enables Reversible Engraftment of a Gut Bacterial Commensal

by Sean M. Kearney, Sean M. Gibbons, Susan E. Erdman, Eric J. Alm
Published 2018-08-01

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses

by Claire Duvallet, Sean M. Gibbons, Thomas Gurry, Rafael A. Irizarry, Eric J. Alm
Published 2017-12-01

Characterization of the salivary microbiome in patients with pancreatic cancer

by Pedro J. Torres, Erin M. Fletcher, Sean M. Gibbons, Michael Bouvet, Kelly S. Doran, Scott T. Kelley
Published 2015-11-01

Disturbance Regimes Predictably Alter Diversity in an Ecologically Complex Bacterial System

by Sean M. Gibbons, Monika Scholz, Alan L. Hutchison, Aaron R. Dinner, Jack A. Gilbert, Maureen L. Coleman
Published 2016-12-01

Investigating the impact of storage conditions on microbial community composition in soil samples.

by Benjamin E R Rubin, Sean M Gibbons, Suzanne Kennedy, Jarrad Hampton-Marcell, Sarah Owens, Jack A Gilbert
Published 2013-01-01

Invasive Plants Rapidly Reshape Soil Properties in a Grassland Ecosystem

by Sean M. Gibbons, Ylva Lekberg, Daniel L. Mummey, Naseer Sangwan, Philip W. Ramsey, Jack A. Gilbert, Ashley Shade
Published 2017-03-01

Rapid response of arbuscular mycorrhizal fungal communities to short-term fertilization in an alpine grassland on the Qinghai-Tibet Plateau

by Xingjia Xiang, Sean M. Gibbons, Jin-Sheng He, Chao Wang, Dan He, Qian Li, Yingying Ni, Haiyan Chu
Published 2016-07-01

Identifying predictive features of Clostridium difficile infection recurrence before, during, and after primary antibiotic treatment

by Sepideh Pakpour, Amit Bhanvadia, Roger Zhu, Abhimanyu Amarnani, Sean M. Gibbons, Thomas Gurry, Eric J. Alm, Laura A. Martello
Published 2017-11-01

Health and disease markers correlate with gut microbiome composition across thousands of people

by Ohad Manor, Chengzhen L. Dai, Sergey A. Kornilov, Brett Smith, Nathan D. Price, Jennifer C. Lovejoy, Sean M. Gibbons, Andrew T. Magis
Published 2020-10-01

Non-responder phenotype reveals apparent microbiome-wide antibiotic tolerance in the murine gut

by Christian Diener, Anna C. H. Hoge, Sean M. Kearney, Ulrike Kusebauch, Sushmita Patwardhan, Robert L. Moritz, Susan E. Erdman, Sean M. Gibbons
Published 2021-03-01