Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks.

by Hulda S Haraldsdóttir, Ronan M T Fleming
Published 2016-11-01

A systems approach reveals distinct metabolic strategies among the NCI-60 cancer cell lines.

by Maike K Aurich, Ronan M T Fleming, Ines Thiele
Published 2017-08-01

A systems biology approach to drug targets in Pseudomonas aeruginosa biofilm.

by Gunnar Sigurdsson, Ronan M T Fleming, Almut Heinken, Ines Thiele
Published 2012-01-01

Consistent estimation of Gibbs energy using component contributions.

by Elad Noor, Hulda S Haraldsdóttir, Ron Milo, Ronan M T Fleming
Published 2013-01-01

Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization.

by Ines Thiele, Neema Jamshidi, Ronan M T Fleming, Bernhard Ø Palsson
Published 2009-03-01

Embryonic development of selectively vulnerable neurons in Parkinson’s disease

by Miguel A. P. Oliveira, Rudi Balling, Marten P. Smidt, Ronan M. T. Fleming
Published 2017-06-01

Metabolic and signalling network maps integration: application to cross-talk studies and omics data analysis in cancer

by Nicolas Sompairac, Jennifer Modamio, Emmanuel Barillot, Ronan M. T. Fleming, Andrei Zinovyev, Inna Kuperstein
Published 2019-04-01

Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease

by Almut Heinken, Dmitry A. Ravcheev, Federico Baldini, Laurent Heirendt, Ronan M. T. Fleming, Ines Thiele
Published 2019-05-01

Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage.

by Ines Thiele, Ronan M T Fleming, Richard Que, Aarash Bordbar, Dinh Diep, Bernhard O Palsson
Published 2012-01-01

A constraint-based modelling approach to metabolic dysfunction in Parkinson's disease

by Longfei Mao, Averina Nicolae, Miguel A.P. Oliveira, Feng He, Siham Hachi, Ronan M.T. Fleming
Published 2015-01-01

Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D

by German A. Preciat Gonzalez, Lemmer R. P. El Assal, Alberto Noronha, Ines Thiele, Hulda S. Haraldsdóttir, Ronan M. T. Fleming
Published 2017-06-01

Derivation of Human Midbrain-Specific Organoids from Neuroepithelial Stem Cells

by Anna S. Monzel, Lisa M. Smits, Kathrin Hemmer, Siham Hachi, Edinson Lucumi Moreno, Thea van Wuellen, Javier Jarazo, Jonas Walter, Inga Brüggemann, Ibrahim Boussaad, Emanuel Berger, Ronan M.T. Fleming, Silvia Bolognin, Jens C. Schwamborn
Published 2017-05-01

Integrated Analyses of Microbiome and Longitudinal Metabolome Data Reveal Microbial-Host Interactions on Sulfur Metabolism in Parkinson’s Disease

by Johannes Hertel, Amy C. Harms, Almut Heinken, Federico Baldini, Cyrille C. Thinnes, Enrico Glaab, Daniel A. Vasco, Maik Pietzner, Isobel D. Stewart, Nicholas J. Wareham, Claudia Langenberg, Claudia Trenkwalder, Rejko Krüger, Thomas Hankemeier, Ronan M.T. Fleming, Brit Mollenhauer, Ines Thiele
Published 2019-11-01

Phenotype-Agnostic Molecular Subtyping of Neurodegenerative Disorders: The Cincinnati Cohort Biomarker Program (CCBP)

by Andrea Sturchio, Luca Marsili, Joaquin A. Vizcarra, Alok K. Dwivedi, Marcelo A. Kauffman, Marcelo A. Kauffman, Andrew P. Duker, Peixin Lu, Peixin Lu, Michael W. Pauciulo, Benjamin D. Wissel, Benjamin D. Wissel, Emily J. Hill, Benjamin Stecher, Elizabeth G. Keeling, Achala S. Vagal, Lily Wang, David B. Haslam, Matthew J. Robson, Caroline M. Tanner, Daniel W. Hagey, Samir El Andaloussi, Kariem Ezzat, Ronan M. T. Fleming, Long J. Lu, Max A. Little, Max A. Little, Alberto J. Espay
Published 2020-10-01