Comparative Genomic Analysis Reveals Novel Microcompartment-Associated Metabolic Pathways in the Human Gut Microbiome

by Dmitry A. Ravcheev, Dmitry A. Ravcheev, Lubin Moussu, Semra Smajic, Ines Thiele, Ines Thiele, Ines Thiele
Published 2019-07-01

From Network Analysis to Functional Metabolic Modeling of the Human Gut Microbiota

by Eugen Bauer, Ines Thiele
Published 2018-03-01

Predicting gastrointestinal drug effects using contextualized metabolic models.

by Marouen Ben Guebila, Ines Thiele
Published 2019-06-01

Contextualization procedure and modeling of monocyte specific TLR signaling.

by Maike K Aurich, Ines Thiele
Published 2012-01-01

Comparative Genomic Analysis of the Human Gut Microbiome Reveals a Broad Distribution of Metabolic Pathways for the Degradation of Host-Synthetized Mucin Glycans and Utilization of...

by Dmitry A. Ravcheev, Ines Thiele
Published 2017-08-01

Metabolic modelling reveals broad changes in gut microbial metabolism in inflammatory bowel disease patients with dysbiosis

by Almut Heinken, Johannes Hertel, Ines Thiele
Published 2021-05-01

MetaboTools: A comprehensive toolbox for analysis of genome-scale metabolic models

by Maike Kathrin Aurich, Ronan Fleming, Ines Thiele
Published 2016-08-01

Integration of constraint-based modeling with fecal metabolomics reveals large deleterious effects of Fusobacterium spp. on community butyrate production

by Johannes Hertel, Almut Heinken, Filippo Martinelli, Ines Thiele
Published 2021-01-01

A systems approach reveals distinct metabolic strategies among the NCI-60 cancer cell lines.

by Maike K Aurich, Ronan M T Fleming, Ines Thiele
Published 2017-08-01

Correction: Identification of Potential Pathway Mediation Targets in Toll-like Receptor Signaling

by Fan Li, Ines Thiele, Neema Jamshidi, Bernhard Ø. Palsson
Published 2009-11-01

Identification of potential pathway mediation targets in Toll-like receptor signaling.

by Fan Li, Ines Thiele, Neema Jamshidi, Bernhard Ø Palsson
Published 2009-02-01

A systems biology approach to drug targets in Pseudomonas aeruginosa biofilm.

by Gunnar Sigurdsson, Ronan M T Fleming, Almut Heinken, Ines Thiele
Published 2012-01-01

Correction: Identification of Potential Pathway Mediation Targets in Toll-like Receptor Signaling.

by Fan Li, Ines Thiele, Neema Jamshidi, Bernhard Ø. Palsson
Published 2009-11-01

Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization.

by Ines Thiele, Neema Jamshidi, Ronan M T Fleming, Bernhard Ø Palsson
Published 2009-03-01

BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities.

by Eugen Bauer, Johannes Zimmermann, Federico Baldini, Ines Thiele, Christoph Kaleta
Published 2017-05-01

Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease

by Almut Heinken, Dmitry A. Ravcheev, Federico Baldini, Laurent Heirendt, Ronan M. T. Fleming, Ines Thiele
Published 2019-05-01

Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage.

by Ines Thiele, Ronan M T Fleming, Richard Que, Aarash Bordbar, Dinh Diep, Bernhard O Palsson
Published 2012-01-01

Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome

by Ines Thiele, Swagatika Sahoo, Almut Heinken, Johannes Hertel, Laurent Heirendt, Maike K Aurich, Ronan MT Fleming
Published 2020-05-01

Comparative evaluation of atom mapping algorithms for balanced metabolic reactions: application to Recon 3D

by German A. Preciat Gonzalez, Lemmer R. P. El Assal, Alberto Noronha, Ines Thiele, Hulda S. Haraldsdóttir, Ronan M. T. Fleming
Published 2017-06-01

Dynamic genome-scale cell-specific metabolic models reveal novel inter-cellular and intra-cellular metabolic communications during ovarian follicle development

by Beatriz Peñalver Bernabé, Ines Thiele, Eugene Galdones, Anaar Siletz, Sriram Chandrasekaran, Teresa K. Woodruff, Linda J. Broadbelt, Lonnie D. Shea
Published 2019-06-01