Alvis: a tool for contig and read ALignment VISualisation and chimera detection

by Samuel Martin, Richard M. Leggett
Published 2021-03-01

SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines

by Abraham Gihawi, Ghanasyam Rallapalli, Rachel Hurst, Colin S. Cooper, Richard M. Leggett, Daniel S. Brewer
Published 2019-10-01

StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics [v1; ref status: indexed, http://f1000r.es/28e]

by Ricardo H. Ramirez-Gonzalez, Richard M. Leggett, Darren Waite, Anil Thanki, Nizar Drou, Mario Caccamo, Robert Davey
Published 2013-11-01

StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics [v2; ref status: indexed, http://f1000r.es/2x1]

by Ricardo H. Ramirez-Gonzalez, Richard M. Leggett, Darren Waite, Anil Thanki, Nizar Drou, Mario Caccamo, Robert Davey
Published 2014-02-01

Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs.

by Richard M Leggett, Ricardo H Ramirez-Gonzalez, Walter Verweij, Cintia G Kawashima, Zamin Iqbal, Jonathan D G Jones, Mario Caccamo, Daniel Maclean
Published 2013-01-01

Host Subtraction, Filtering and Assembly Validations for Novel Viral Discovery Using Next Generation Sequencing Data.

by Gordon M Daly, Richard M Leggett, William Rowe, Samuel Stubbs, Maxim Wilkinson, Ricardo H Ramirez-Gonzalez, Mario Caccamo, William Bernal, Jonathan L Heeney
Published 2015-01-01

MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry [version 1; referees: 1 approved, 2 approved with reservations]

by Miten Jain, John R. Tyson, Matthew Loose, Camilla L.C. Ip, David A. Eccles, Justin O'Grady, Sunir Malla, Richard M. Leggett, Ola Wallerman, Hans J. Jansen, Vadim Zalunin, Ewan Birney, Bonnie L. Brown, Terrance P. Snutch, Hugh E. Olsen, MinION Analysis and Reference Consortium
Published 2017-05-01

MinION Analysis and Reference Consortium: Phase 1 data release and analysis [version 1; referees: 2 approved]

by Camilla L.C. Ip, Matthew Loose, John R. Tyson, Mariateresa de Cesare, Bonnie L. Brown, Miten Jain, Richard M. Leggett, David A. Eccles, Vadim Zalunin, John M. Urban, Paolo Piazza, Rory J. Bowden, Benedict Paten, Solomon Mwaigwisya, Elizabeth M. Batty, Jared T. Simpson, Terrance P. Snutch, Ewan Birney, David Buck, Sara Goodwin, Hans J. Jansen, Justin O'Grady, Hugh E. Olsen, MinION Analysis and Reference Consortium
Published 2015-10-01

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole

by Kara Martin, Katrin Schmidt, Andrew Toseland, Chris A. Boulton, Kerrie Barry, Bánk Beszteri, Corina P. D. Brussaard, Alicia Clum, Chris G. Daum, Emiley Eloe-Fadrosh, Allison Fong, Brian Foster, Bryce Foster, Michael Ginzburg, Marcel Huntemann, Natalia N. Ivanova, Nikos C. Kyrpides, Erika Lindquist, Supratim Mukherjee, Krishnaveni Palaniappan, T. B. K. Reddy, Mariam R. Rizkallah, Simon Roux, Klaas Timmermans, Susannah G. Tringe, Willem H. van de Poll, Neha Varghese, Klaus U. Valentin, Timothy M. Lenton, Igor V. Grigoriev, Richard M. Leggett, Vincent Moulton, Thomas Mock
Published 2021-09-01