Population genomics and climate adaptation of a C4 perennial grass, Panicum hallii (Poaceae)

by Billie A. Gould, Juan Diego Palacio-Mejia, Jerry Jenkins, Sujan Mamidi, Kerrie Barry, Jeremy Schmutz, Thomas E. Juenger, David B. Lowry
Published 2018-11-01

Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locu...

by Alija Bajro Mujic, Alan Kuo, Andrew Tritt, Anna Lipzen, Cindy Chen, Jenifer Johnson, Aditi Sharma, Kerrie Barry, Igor V. Grigoriev, Joseph W. Spatafora
Published 2017-06-01

Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization.

by Marianne Emery, M Madeline S Willis, Yue Hao, Kerrie Barry, Khouanchy Oakgrove, Yi Peng, Jeremy Schmutz, Eric Lyons, J Chris Pires, Patrick P Edger, Gavin C Conant
Published 2018-03-01

Correction to: Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta

by Baosheng Wang, Julius P. Mojica, Nadeesha Perera, Cheng-Ruei Lee, John T. Lovell, Aditi Sharma, Catherine Adam, Anna Lipzen, Kerrie Barry, Daniel S. Rokhsar, Jeremy Schmutz, Thomas Mitchell-Olds
Published 2019-08-01

Ancient polymorphisms contribute to genome-wide variation by long-term balancing selection and divergent sorting in Boechera stricta

by Baosheng Wang, Julius P. Mojica, Nadeesha Perera, Cheng-Ruei Lee, John T. Lovell, Aditi Sharma, Catherine Adam, Anna Lipzen, Kerrie Barry, Daniel S. Rokhsar, Jeremy Schmutz, Thomas Mitchell-Olds
Published 2019-06-01

Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery

by Stephen J. Mondo, Diego Javier Jiménez, Ronald E. Hector, Anna Lipzen, Mi Yan, Kurt LaButti, Kerrie Barry, Jan Dirk van Elsas, Igor V. Grigoriev, Nancy N. Nichols
Published 2019-09-01

Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales

by Raúl Castanera, Gúmer Pérez, Leticia López-Varas, Joëlle Amselem, Kurt LaButti, Vasanth Singan, Anna Lipzen, Sajeet Haridas, Kerrie Barry, Igor V. Grigoriev, Antonio G. Pisabarro, Lucía Ramírez
Published 2017-11-01

Genetic dissection of natural variation in oilseed traits of camelina by whole‐genome resequencing and QTL mapping

by Huang Li, Xiao Hu, John T. Lovell, Paul P. Grabowski, Sujan Mamidi, Cindy Chen, Mojgan Amirebrahimi, Indika Kahanda, Brendan Mumey, Kerrie Barry, David Kudrna, Jeremy Schmutz, Jennifer Lachowiec, Chaofu Lu
Published 2021-07-01

A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism.

by Yi Xiong, Vincent W Wu, Andrea Lubbe, Lina Qin, Siwen Deng, Megan Kennedy, Diane Bauer, Vasanth R Singan, Kerrie Barry, Trent R Northen, Igor V Grigoriev, N Louise Glass
Published 2017-05-01

Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing

by Chunman Zuo, Matthew Blow, Avinash Sreedasyam, Rita C. Kuo, Govindarajan Kunde Ramamoorthy, Ivone Torres-Jerez, Guifen Li, Mei Wang, David Dilworth, Kerrie Barry, Michael Udvardi, Jeremy Schmutz, Yuhong Tang, Ying Xu
Published 2018-06-01

Multiple Maize Reference Genomes Impact the Identification of Variants by Genome-Wide Association Study in a Diverse Inbred Panel

by Joseph L. Gage, Brieanne Vaillancourt, John P. Hamilton, Norma C. Manrique-Carpintero, Timothy J. Gustafson, Kerrie Barry, Anna Lipzen, William F. Tracy, Mark A. Mikel, Shawn M. Kaeppler, C. Robin Buell, Natalia de Leon
Published 2019-06-01

Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales)

by Andrew S. Urquhart, Stephen J. Mondo, Miia R. Mäkelä, James K. Hane, James K. Hane, Ad Wiebenga, Guifen He, Sirma Mihaltcheva, Jasmyn Pangilinan, Anna Lipzen, Kerrie Barry, Ronald P. de Vries, Igor V. Grigoriev, Alexander Idnurm
Published 2018-12-01

A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism

by Elizabeth A. Cooper, Zachary W. Brenton, Barry S. Flinn, Jerry Jenkins, Shengqiang Shu, Dave Flowers, Feng Luo, Yunsheng Wang, Penny Xia, Kerrie Barry, Chris Daum, Anna Lipzen, Yuko Yoshinaga, Jeremy Schmutz, Christopher Saski, Wilfred Vermerris, Stephen Kresovich
Published 2019-05-01

Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica

by Kyle R. Pomraning, Erin L. Bredeweg, Eduard J. Kerkhoven, Kerrie Barry, Sajeet Haridas, Hope Hundley, Kurt LaButti, Anna Lipzen, Mi Yan, Jon K. Magnuson, Blake A. Simmons, Igor V. Grigoriev, Jens Nielsen, Scott E. Baker
Published 2018-12-01

Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants

by Isidro Álvarez-Escribano, Christoph Sasse, Jin Woo Bok, Hyunsoo Na, Mojgan Amirebrahimi, Anna Lipzen, Wendy Schackwitz, Joel Martin, Kerrie Barry, Gabriel Gutiérrez, Sara Cea-Sánchez, Ana T. Marcos, Igor V. Grigoriev, Nancy P. Keller, Gerhard H. Braus, David Cánovas
Published 2019-11-01

A willow sex chromosome reveals convergent evolution of complex palindromic repeats

by Ran Zhou, David Macaya-Sanz, Craig H. Carlson, Jeremy Schmutz, Jerry W. Jenkins, David Kudrna, Aditi Sharma, Laura Sandor, Shengqiang Shu, Kerrie Barry, Gerald A. Tuskan, Tao Ma, Jianquan Liu, Matthew Olson, Lawrence B. Smart, Stephen P. DiFazio
Published 2020-02-01

Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi

by Dániel G. Knapp, Julianna B. Németh, Kerrie Barry, Matthieu Hainaut, Bernard Henrissat, Jenifer Johnson, Alan Kuo, Joanne Hui Ping Lim, Anna Lipzen, Matt Nolan, Robin A. Ohm, László Tamás, Igor V. Grigoriev, Joseph W. Spatafora, László G. Nagy, Gábor M. Kovács
Published 2018-04-01

Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea.

by Hajime Muraguchi, Kiwamu Umezawa, Mai Niikura, Makoto Yoshida, Toshinori Kozaki, Kazuo Ishii, Kiyota Sakai, Motoyuki Shimizu, Kiyoshi Nakahori, Yuichi Sakamoto, Cindy Choi, Chew Yee Ngan, Eika Lindquist, Anna Lipzen, Andrew Tritt, Sajeet Haridas, Kerrie Barry, Igor V Grigoriev, Patricia J Pukkila
Published 2015-01-01

Genome-wide association analysis of stalk biomass and anatomical traits in maize

by Mona Mazaheri, Marlies Heckwolf, Brieanne Vaillancourt, Joseph L. Gage, Brett Burdo, Sven Heckwolf, Kerrie Barry, Anna Lipzen, Camila Bastos Ribeiro, Thomas J. Y. Kono, Heidi F. Kaeppler, Edgar P. Spalding, Candice N. Hirsch, C. Robin Buell, Natalia de Leon, Shawn M. Kaeppler
Published 2019-01-01

Extensive Genetic Diversity is Present within North American Switchgrass Germplasm

by Joseph Evans, Millicent D. Sanciangco, Kin H. Lau, Emily Crisovan, Kerrie Barry, Chris Daum, Hope Hundley, Jerry Jenkins, Megan Kennedy, Govindarajan Kunde-Ramamoorthy, Brieanne Vaillancourt, Ananta Acharya, Jeremy Schmutz, Malay Saha, Shawn M. Kaeppler, E. Charles Brummer, Michael D. Casler, C. Robin Buell
Published 2018-03-01