In memory of James Taylor: the birth of Galaxy

by Anton Nekrutenko, Michael C. Schatz
Published 2020-04-01

Graph genomes article collection

by Michael C. Schatz, Andrew Cosgrove
Published 2019-02-01

The challenge of small-scale repeats for indel discovery

by Giuseppe eNarzisi, Michael C Schatz
Published 2015-01-01

GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes

by T. Rhyker Ranallo-Benavidez, Kamil S. Jaron, Michael C. Schatz
Published 2020-03-01

Erratum to: The advantages of SMRT sequencing

by Richard J. Roberts, Mauricio O. Carneiro, Michael C. Schatz
Published 2017-08-01

A multi-task convolutional deep neural network for variant calling in single molecule sequencing

by Ruibang Luo, Fritz J. Sedlazeck, Tak-Wah Lam, Michael C. Schatz
Published 2019-03-01

Recovering rearranged cancer chromosomes from karyotype graphs

by Sergey Aganezov, Ilya Zban, Vitaly Aksenov, Nikita Alexeev, Michael C. Schatz
Published 2019-12-01

Addressing confounding artifacts in reconstruction of gene co-expression networks

by Princy Parsana, Claire Ruberman, Andrew E. Jaffe, Michael C. Schatz, Alexis Battle, Jeffrey T. Leek
Published 2019-05-01

LRSim: A Linked-Reads Simulator Generating Insights for Better Genome Partitioning

by Ruibang Luo, Fritz J. Sedlazeck, Charlotte A. Darby, Stephen M. Kelly, Michael C. Schatz
Published 2017-01-01

Pan-genomic matching statistics for targeted nanopore sequencing

by Omar Ahmed, Massimiliano Rossi, Sam Kovaka, Michael C. Schatz, Travis Gagie, Christina Boucher, Ben Langmead
Published 2021-06-01

RaGOO: fast and accurate reference-guided scaffolding of draft genomes

by Michael Alonge, Sebastian Soyk, Srividya Ramakrishnan, Xingang Wang, Sara Goodwin, Fritz J. Sedlazeck, Zachary B. Lippman, Michael C. Schatz
Published 2019-10-01

Conservation Genomics of the Declining North American Bumblebee Bombus terricola Reveals Inbreeding and Selection on Immune Genes

by Clement F. Kent, Alivia Dey, Harshilkumar Patel, Nadejda Tsvetkov, Tanushree Tiwari, Victoria J. MacPhail, Victoria J. MacPhail, Yann Gobeil, Brock A. Harpur, Brock A. Harpur, Brock A. Harpur, James Gurtowski, Michael C. Schatz, Michael C. Schatz, Sheila R. Colla, Sheila R. Colla, Amro Zayed
Published 2018-08-01

Local adaptation and archaic introgression shape global diversity at human structural variant loci

by Stephanie M Yan, Rachel M Sherman, Dylan J Taylor, Divya R Nair, Andrew N Bortvin, Michael C Schatz, Rajiv C McCoy
Published 2021-09-01

Big Data: Astronomical or Genomical?

by Zachary D Stephens, Skylar Y Lee, Faraz Faghri, Roy H Campbell, Chengxiang Zhai, Miles J Efron, Ravishankar Iyer, Michael C Schatz, Saurabh Sinha, Gene E Robinson
Published 2015-07-01

Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees.

by R Scott Cornman, Yan Ping Chen, Michael C Schatz, Craig Street, Yan Zhao, Brian Desany, Michael Egholm, Stephen Hutchison, Jeffery S Pettis, W Ian Lipkin, Jay D Evans
Published 2009-06-01

Paragraph: a graph-based structural variant genotyper for short-read sequence data

by Sai Chen, Peter Krusche, Egor Dolzhenko, Rachel M. Sherman, Roman Petrovski, Felix Schlesinger, Melanie Kirsche, David R. Bentley, Michael C. Schatz, Fritz J. Sedlazeck, Michael A. Eberle
Published 2019-12-01

Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud

by Liya Wang, Zhenyuan Lu, Melissa delaBastide, Peter Van Buren, Xiaofei Wang, Cornel Ghiban, Michael Regulski, Jorg Drenkow, Xiaosa Xu, Carlos Ortiz-Ramirez, Cristina F. Marco, Sara Goodwin, Alexander Dobin, Kenneth D. Birnbaum, David P. Jackson, Robert A. Martienssen, William R. McCombie, David A. Micklos, Michael C. Schatz, Michael C. Schatz, Doreen H. Ware, Doreen H. Ware, Thomas R. Gingeras
Published 2020-03-01

The human origin recognition complex is essential for pre-RC assembly, mitosis, and maintenance of nuclear structure

by Hsiang-Chen Chou, Kuhulika Bhalla, Osama EL Demerdesh, Olaf Klingbeil, Kaarina Hanington, Sergey Aganezov, Peter Andrews, Habeeb Alsudani, Kenneth Chang, Christopher R Vakoc, Michael C Schatz, W Richard McCombie, Bruce Stillman
Published 2021-02-01

Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library

by Amanda M. Hulse-Kemp, Shamoni Maheshwari, Kevin Stoffel, Theresa A. Hill, David Jaffe, Stephen R. Williams, Neil Weisenfeld, Srividya Ramakrishnan, Vijay Kumar, Preyas Shah, Michael C. Schatz, Deanna M. Church, Allen Van Deynze
Published 2018-01-01

A plasmid locus associated with Klebsiella clinical infections encodes a microbiome-dependent gut fitness factor.

by Jay Vornhagen, Christine M Bassis, Srividya Ramakrishnan, Robert Hein, Sophia Mason, Yehudit Bergman, Nicole Sunshine, Yunfan Fan, Caitlyn L Holmes, Winston Timp, Michael C Schatz, Vincent B Young, Patricia J Simner, Michael A Bachman
Published 2021-04-01