A Note on Sequence Prediction over Large Alphabets

by Travis Gagie
Published 2012-02-01

Buffering updates enables efficient dynamic de Bruijn graphs

by Jarno Alanko, Bahar Alipanahi, Jonathen Settle, Christina Boucher, Travis Gagie
Published 2021-01-01

More Time-Space Tradeoffs for Finding a Shortest Unique Substring

by Hideo Bannai, Travis Gagie, Gary Hoppenworth, Simon J. Puglisi, Luís M. S. Russo
Published 2020-09-01

Prefix-free parsing for building big BWTs

by Christina Boucher, Travis Gagie, Alan Kuhnle, Ben Langmead, Giovanni Manzini, Taher Mun
Published 2019-05-01

Pan-genomic matching statistics for targeted nanopore sequencing

by Omar Ahmed, Massimiliano Rossi, Sam Kovaka, Michael C. Schatz, Travis Gagie, Christina Boucher, Ben Langmead
Published 2021-06-01