Sequencing Technologies and Analyses: Where Have We Been and Where Are We Going?

by Vikas Bansal, Christina Boucher
Published 2019-08-01

Fast and exact quantification of motif occurrences in biological sequences

by Mattia Prosperi, Simone Marini, Christina Boucher
Published 2021-09-01

Propensity score synthetic augmentation matching using generative adversarial networks (PSSAM-GAN)

by Shantanu Ghosh, Christina Boucher, Jiang Bian, Mattia Prosperi
Published 2021-01-01

Identification of co-evolving temporal networks

by Rasha Elhesha, Aisharjya Sarkar, Christina Boucher, Tamer Kahveci
Published 2019-06-01

Kohdista: an efficient method to index and query possible Rmap alignments

by Martin D. Muggli, Simon J. Puglisi, Christina Boucher
Published 2019-12-01

Fast and efficient Rmap assembly using the Bi-labelled de Bruijn graph

by Kingshuk Mukherjee, Massimiliano Rossi, Leena Salmela, Christina Boucher
Published 2021-05-01

Buffering updates enables efficient dynamic de Bruijn graphs

by Jarno Alanko, Bahar Alipanahi, Jonathen Settle, Christina Boucher, Travis Gagie
Published 2021-01-01

Prefix-free parsing for building big BWTs

by Christina Boucher, Travis Gagie, Alan Kuhnle, Ben Langmead, Giovanni Manzini, Taher Mun
Published 2019-05-01

aPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events.

by Thomas Harrison, Jaime Ruiz, Daniel B Sloan, Asa Ben-Hur, Christina Boucher
Published 2016-01-01

Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful?

by Ilya B. Slizovskiy, Kingshuk Mukherjee, Christopher J. Dean, Christina Boucher, Noelle R. Noyes
Published 2020-06-01

Pan-genomic matching statistics for targeted nanopore sequencing

by Omar Ahmed, Massimiliano Rossi, Sam Kovaka, Michael C. Schatz, Travis Gagie, Christina Boucher, Ben Langmead
Published 2021-06-01

Exploring Prediction of Antimicrobial Resistance Based on Protein Solvent Accessibility Variation

by Simone Marini, Simone Marini, Marco Oliva, Ilya B. Slizovskiy, Noelle Robertson Noyes, Christina Boucher, Mattia Prosperi
Published 2021-01-01

A Cautionary Report for Pathogen Identification Using Shotgun Metagenomics; A Comparison to Aerobic Culture and Polymerase Chain Reaction for Salmonella enterica Identification

by Enrique Doster, Pablo Rovira, Noelle R. Noyes, Brandy A. Burgess, Xiang Yang, Margaret D. Weinroth, Lyndsey Linke, Roberta Magnuson, Christina Boucher, Keith E. Belk, Paul S. Morley
Published 2019-11-01

Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems

by Pablo Rovira, Tim McAllister, Steven M. Lakin, Shaun R. Cook, Enrique Doster, Noelle R. Noyes, Maggie D. Weinroth, Xiang Yang, Jennifer K. Parker, Christina Boucher, Calvin W. Booker, Dale R. Woerner, Keith E. Belk, Paul S. Morley
Published 2019-09-01

Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period

by Enrique Doster, Enrique Doster, Pablo Rovira, Pablo Rovira, Noelle R. Noyes, Noelle R. Noyes, Brandy A. Burgess, Xiang Yang, Margaret D. Weinroth, Margaret D. Weinroth, Steven M. Lakin, Steven M. Lakin, Christopher J. Dean, Christopher J. Dean, Lyndsey Linke, Roberta Magnuson, Kenneth I. Jones, Christina Boucher, Jamie Ruiz, Keith E. Belk, Keith E. Belk, Paul S. Morley, Paul S. Morley, Paul S. Morley
Published 2018-07-01