BGP: identifying gene-specific branching dynamics from single-cell data with a branching Gaussian process

by Alexis Boukouvalas, James Hensman, Magnus Rattray
Published 2018-05-01

Identifying stochastic oscillations in single-cell live imaging time series using Gaussian processes.

by Nick E Phillips, Cerys Manning, Nancy Papalopulu, Magnus Rattray
Published 2017-05-01

Detecting periodicities with Gaussian processes

by Nicolas Durrande, James Hensman, Magnus Rattray, Neil D. Lawrence
Published 2016-04-01

OscoNet: inferring oscillatory gene networks

by Luisa Cutillo, Alexis Boukouvalas, Elli Marinopoulou, Nancy Papalopulu, Magnus Rattray
Published 2020-08-01

A model of k-mer surprisal to quantify local sequence information content surrounding splice regions

by Sam Humphrey, Alastair Kerr, Magnus Rattray, Caroline Dive, Crispin J. Miller
Published 2020-11-01

Evolutionary systems biology of amino acid biosynthetic cost in yeast.

by Michael D Barton, Daniela Delneri, Stephen G Oliver, Magnus Rattray, Casey M Bergman
Published 2010-08-01

Correction: Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast

by Michael D. Barton, Daniela Delneri, Stephen G. Oliver, Magnus Rattray, Casey M. Bergman
Published 2010-01-01

Correction: Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast.

by Michael D. Barton, Daniela Delneri, Stephen G. Oliver, Magnus Rattray, Casey M. Bergman
Published 2010-01-01

Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data

by Tomasz Dzida, Mudassar Iqbal, Iryna Charapitsa, George Reid, Henk Stunnenberg, Filomena Matarese, Korbinian Grote, Antti Honkela, Magnus Rattray
Published 2017-09-01

Inference of RNA polymerase II transcription dynamics from chromatin immunoprecipitation time course data.

by Ciira wa Maina, Antti Honkela, Filomena Matarese, Korbinian Grote, Hendrik G Stunnenberg, George Reid, Neil D Lawrence, Magnus Rattray
Published 2014-05-01

Quantitative single-cell live imaging links HES5 dynamics with cell-state and fate in murine neurogenesis

by Cerys S. Manning, Veronica Biga, James Boyd, Jochen Kursawe, Bodvar Ymisson, David G. Spiller, Christopher M. Sanderson, Tobias Galla, Magnus Rattray, Nancy Papalopulu
Published 2019-06-01

Analysis of chromatin organization and gene expression in T cells identifies functional genes for rheumatoid arthritis

by Jing Yang, Amanda McGovern, Paul Martin, Kate Duffus, Xiangyu Ge, Peyman Zarrineh, Andrew P. Morris, Antony Adamson, Peter Fraser, Magnus Rattray, Stephen Eyre
Published 2020-09-01

Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis.

by Darren M Soanes, Intikhab Alam, Mike Cornell, Han Min Wong, Cornelia Hedeler, Norman W Paton, Magnus Rattray, Simon J Hubbard, Stephen G Oliver, Nicholas J Talbot
Published 2008-06-01

HOX paralogs selectively convert binding of ubiquitous transcription factors into tissue-specific patterns of enhancer activation.

by Laure Bridoux, Peyman Zarrineh, Joshua Mallen, Mike Phuycharoen, Victor Latorre, Frank Ladam, Marta Losa, Syed Murtuza Baker, Charles Sagerstrom, Kimberly A Mace, Magnus Rattray, Nicoletta Bobola
Published 2020-12-01

C9ORF72 GGGGCC Expanded Repeats Produce Splicing Dysregulation which Correlates with Disease Severity in Amyotrophic Lateral Sclerosis.

by Johnathan Cooper-Knock, Joanna J Bury, Paul R Heath, Matthew Wyles, Adrian Higginbottom, Catherine Gelsthorpe, J Robin Highley, Guillaume Hautbergue, Magnus Rattray, Janine Kirby, Pamela J Shaw
Published 2015-01-01

Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation

by Nick E Phillips, Cerys S Manning, Tom Pettini, Veronica Biga, Elli Marinopoulou, Peter Stanley, James Boyd, James Bagnall, Pawel Paszek, David G Spiller, Michael RH White, Marc Goodfellow, Tobias Galla, Magnus Rattray, Nancy Papalopulu
Published 2016-10-01

Rheumatoid arthritis reprograms circadian output pathways

by Toryn M. Poolman, Julie Gibbs, Amy L. Walker, Suzanna Dickson, Laura Farrell, James Hensman, Alexandra C. Kendall, Robert Maidstone, Stacey Warwood, Andrew Loudon, Magnus Rattray, Ian N. Bruce, Anna Nicolaou, David W. Ray
Published 2019-02-01

Erratum to: Making sense of big data in health research: towards an EU action plan

by Charles Auffray, Rudi Balling, Inês Barroso, László Bencze, Mikael Benson, Jay Bergeron, Enrique Bernal-Delgado, Niklas Blomberg, Christoph Bock, Ana Conesa, Susanna Del Signore, Christophe Delogne, Peter Devilee, Alberto Di Meglio, Marinus Eijkemans, Paul Flicek, Norbert Graf, Vera Grimm, Henk-Jan Guchelaar, Yi-Ke Guo, Ivo Glynne Gut, Allan Hanbury, Shahid Hanif, Ralf-Dieter Hilgers, Ángel Honrado, D. Rod Hose, Jeanine Houwing-Duistermaat, Tim Hubbard, Sophie Helen Janacek, Haralampos Karanikas, Tim Kievits, Manfred Kohler, Andreas Kremer, Jerry Lanfear, Thomas Lengauer, Edith Maes, Theo Meert, Werner Müller, Dörthe Nickel, Peter Oledzki, Bertrand Pedersen, Milan Petkovic, Konstantinos Pliakos, Magnus Rattray, Josep Redón i Màs, Reinhard Schneider, Thierry Sengstag, Xavier Serra-Picamal, Wouter Spek, Lea A. I. Vaas, Okker van Batenburg, Marc Vandelaer, Peter Varnai, Pablo Villoslada, Juan Antonio Vizcaíno, John Peter Mary Wubbe, Gianluigi Zanetti
Published 2016-11-01