Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides

by C. Alisha Quandt, Yanming Di, Justin Elser, Pankaj Jaiswal, Joseph W. Spatafora
Published 2016-03-01

Cyclosporine Biosynthesis in Tolypocladium inflatum Benefits Fungal Adaptation to the Environment

by Xiuqing Yang, Peng Feng, Ying Yin, Kathryn Bushley, Joseph W. Spatafora, Chengshu Wang
Published 2018-10-01

Phylogenetic taxon definitions for Fungi, Dikarya, Ascomycota and Basidiomycota

by David S. Hibbett, Meredith Blackwell, Timothy Y. James, Joseph W. Spatafora, John W. Taylor, Rytas Vilgalys
Published 2018-12-01

Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locu...

by Alija Bajro Mujic, Alan Kuo, Andrew Tritt, Anna Lipzen, Cindy Chen, Jenifer Johnson, Aditi Sharma, Kerrie Barry, Igor V. Grigoriev, Joseph W. Spatafora
Published 2017-06-01

Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi

by Ying Chang, D’Ann Rochon, Satoshi Sekimoto, Yan Wang, Mansi Chovatia, Laura Sandor, Asaf Salamov, Igor V. Grigoriev, Jason E. Stajich, Joseph W. Spatafora
Published 2021-02-01

Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolu...

by Javier F. Tabima, Ian A. Trautman, Ying Chang, Yan Wang, Stephen Mondo, Alan Kuo, Asaf Salamov, Igor V. Grigoriev, Jason E. Stajich, Joseph W. Spatafora
Published 2020-09-01

Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum

by Rodrigo A. Olarte, Jon Menke, Ying Zhang, Shawn Sullivan, Jason C. Slot, Yinyin Huang, Jonathan P. Badalamenti, Alisha C. Quandt, Joseph W. Spatafora, Kathryn E. Bushley
Published 2019-02-01

The genome of tolypocladium inflatum: evolution, organization, and expression of the cyclosporin biosynthetic gene cluster.

by Kathryn E Bushley, Rajani Raja, Pankaj Jaiswal, Jason S Cumbie, Mariko Nonogaki, Alexander E Boyd, C Alisha Owensby, Brian J Knaus, Justin Elser, Daniel Miller, Yanming Di, Kerry L McPhail, Joseph W Spatafora
Published 2013-06-01

Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi

by Dániel G. Knapp, Julianna B. Németh, Kerrie Barry, Matthieu Hainaut, Bernard Henrissat, Jenifer Johnson, Alan Kuo, Joanne Hui Ping Lim, Anna Lipzen, Matt Nolan, Robin A. Ohm, László Tamás, Igor V. Grigoriev, Joseph W. Spatafora, László G. Nagy, Gábor M. Kovács
Published 2018-04-01

Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation

by Ole Christian Hagestad, Lingwei Hou, Jeanette H. Andersen, Espen H. Hansen, Bjørn Altermark, Chun Li, Eric Kuhnert, Russell J. Cox, Pedro W. Crous, Joseph W. Spatafora, Kathleen Lail, Mojgan Amirebrahimi, Anna Lipzen, Jasmyn Pangilinan, William Andreopoulos, Richard D. Hayes, Vivian Ng, Igor V. Grigoriev, Stephen A. Jackson, Thomas D. S. Sutton, Alan D. W. Dobson, Teppo Rämä
Published 2021-08-01

Microfluidics and Metabolomics Reveal Symbiotic Bacterial–Fungal Interactions Between Mortierella elongata and Burkholderia Include Metabolite Exchange

by Jessie K. Uehling, Jessie K. Uehling, Matthew R. Entler, Hannah R. Meredith, Hannah R. Meredith, Larry J. Millet, Larry J. Millet, Collin M. Timm, Jayde A. Aufrecht, Gregory M. Bonito, Nancy L. Engle, Jessy L. Labbé, Jessy L. Labbé, Mitchel J. Doktycz, Mitchel J. Doktycz, Mitchel J. Doktycz, Scott T. Retterer, Scott T. Retterer, Joseph W. Spatafora, Jason E. Stajich, Timothy J. Tschaplinski, Rytas J. Vilgalys
Published 2019-10-01

Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum

by Martina Peter, Annegret Kohler, Robin A. Ohm, Alan Kuo, Jennifer Krützmann, Emmanuelle Morin, Matthias Arend, Kerrie W. Barry, Manfred Binder, Cindy Choi, Alicia Clum, Alex Copeland, Nadine Grisel, Sajeet Haridas, Tabea Kipfer, Kurt LaButti, Erika Lindquist, Anna Lipzen, Renaud Maire, Barbara Meier, Sirma Mihaltcheva, Virginie Molinier, Claude Murat, Stefanie Pöggeler, C. Alisha Quandt, Christoph Sperisen, Andrew Tritt, Emilie Tisserant, Pedro W. Crous, Bernard Henrissat, Uwe Nehls, Simon Egli, Joseph W. Spatafora, Igor V. Grigoriev, Francis M. Martin
Published 2016-09-01

Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.

by Robin A Ohm, Nicolas Feau, Bernard Henrissat, Conrad L Schoch, Benjamin A Horwitz, Kerrie W Barry, Bradford J Condon, Alex C Copeland, Braham Dhillon, Fabian Glaser, Cedar N Hesse, Idit Kosti, Kurt LaButti, Erika A Lindquist, Susan Lucas, Asaf A Salamov, Rosie E Bradshaw, Lynda Ciuffetti, Richard C Hamelin, Gert H J Kema, Christopher Lawrence, James A Scott, Joseph W Spatafora, B Gillian Turgeon, Pierre J G M de Wit, Shaobin Zhong, Stephen B Goodwin, Igor V Grigoriev
Published 2012-01-01

Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Fungi.

by Robin A. Ohm, Nicolas Feau, Bernard Henrissat, Conrad L. Schoch, Benjamin A. Horwitz, Kerrie W. Barry, Bradford J. Condon, Alex C. Copeland, Braham Dhillon, Fabian Glaser, Cedar N. Hesse, Idit Kosti, Kurt LaButti, Erika A. Lindquist, Susan Lucas, Asaf A. Salamov, Rosie E. Bradshaw, Lynda Ciuffetti, Richard C. Hamelin, Gert H. J. Kema, Christopher Lawrence, James A. Scott, Joseph W. Spatafora, B. Gillian Turgeon, Pierre J. G. M. de Wit, Shaobin Zhong, Stephen B. Goodwin, Igor V. Grigoriev
Published 2013-03-01

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

by Shingo Miyauchi, Enikő Kiss, Alan Kuo, Elodie Drula, Annegret Kohler, Marisol Sánchez-García, Emmanuelle Morin, Bill Andreopoulos, Kerrie W. Barry, Gregory Bonito, Marc Buée, Akiko Carver, Cindy Chen, Nicolas Cichocki, Alicia Clum, David Culley, Pedro W. Crous, Laure Fauchery, Mariangela Girlanda, Richard D. Hayes, Zsófia Kéri, Kurt LaButti, Anna Lipzen, Vincent Lombard, Jon Magnuson, François Maillard, Claude Murat, Matt Nolan, Robin A. Ohm, Jasmyn Pangilinan, Maíra de Freitas Pereira, Silvia Perotto, Martina Peter, Stephanie Pfister, Robert Riley, Yaron Sitrit, J. Benjamin Stielow, Gergely Szöllősi, Lucia Žifčáková, Martina Štursová, Joseph W. Spatafora, Leho Tedersoo, Lu-Min Vaario, Akiyoshi Yamada, Mi Yan, Pengfei Wang, Jianping Xu, Tom Bruns, Petr Baldrian, Rytas Vilgalys, Christophe Dunand, Bernard Henrissat, Igor V. Grigoriev, David Hibbett, László G. Nagy, Francis M. Martin
Published 2020-10-01