Predicting virus emergence amid evolutionary noise

by Jemma L. Geoghegan, Edward C. Holmes
Published 2017-01-01

How accurately can we assess zoonotic risk?

by Michelle Wille, Jemma L Geoghegan, Edward C Holmes
Published 2021-04-01

Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families.

by Jemma L Geoghegan, Sebastián Duchêne, Edward C Holmes
Published 2017-02-01

A Novel Rubi-Like Virus in the Pacific Electric Ray (<i>Tetronarce californica</i>) Reveals the Complex Evolutionary History of the <i>Matonaviridae</i>

by Rebecca M. Grimwood, Edward C. Holmes, Jemma L. Geoghegan
Published 2021-03-01

Divergent Influenza-Like Viruses of Amphibians and Fish Support an Ancient Evolutionary Association

by Rhys Parry, Michelle Wille, Olivia M. H. Turnbull, Jemma L. Geoghegan, Edward C. Holmes
Published 2020-09-01

Seasonal drivers of the epidemiology of arthropod-borne viruses in Australia.

by Jemma L Geoghegan, Peter J Walker, Jean-Bernard Duchemin, Isabelle Jeanne, Edward C Holmes
Published 2014-11-01

Correction: Continental synchronicity of human influenza virus epidemics despite climactic variation.

by Jemma L Geoghegan, Aldo F Saavedra, Sebastián Duchêne, Sheena Sullivan, Ian Barr, Edward C Holmes
Published 2018-02-01

A comparison of methods for estimating substitution rates from ancient DNA sequence data

by K. Jun Tong, David A. Duchêne, Sebastián Duchêne, Jemma L. Geoghegan, Simon Y. W. Ho
Published 2018-05-01

Continental synchronicity of human influenza virus epidemics despite climatic variation.

by Jemma L Geoghegan, Aldo F Saavedra, Sebastián Duchêne, Sheena Sullivan, Ian Barr, Edward C Holmes
Published 2018-01-01

Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods

by Sebastian Duchene, David A. Duchene, Jemma L. Geoghegan, Zoe A. Dyson, Jane Hawkey, Kathryn E. Holt
Published 2018-06-01

Real-Time Genomics for Tracking Severe Acute Respiratory Syndrome Coronavirus 2 Border Incursions after Virus Elimination, New Zealand

by Jordan Douglas, Jemma L. Geoghegan, James Hadfield, Remco Bouckaert, Matthew Storey, Xiaoyun Ren, Joep de Ligt, Nigel French, David Welch
Published 2021-09-01

Evolution of Human Respiratory Syncytial Virus (RSV) over Multiple Seasons in New South Wales, Australia

by Francesca Di Giallonardo, Jen Kok, Marian Fernandez, Ian Carter, Jemma L. Geoghegan, Dominic E. Dwyer, Edward C. Holmes, John-Sebastian Eden
Published 2018-09-01

Virological Sampling of Inaccessible Wildlife with Drones

by Jemma L. Geoghegan, Vanessa Pirotta, Erin Harvey, Alastair Smith, Jan P. Buchmann, Martin Ostrowski, John-Sebastian Eden, Robert Harcourt, Edward C. Holmes
Published 2018-06-01

Contact heterogeneity, rather than transmission efficiency, limits the emergence and spread of canine influenza virus.

by Benjamin D Dalziel, Kai Huang, Jemma L Geoghegan, Nimalan Arinaminpathy, Edward J Dubovi, Bryan T Grenfell, Stephen P Ellner, Edward C Holmes, Colin R Parrish
Published 2014-10-01

Meta-Transcriptomic Identification of Divergent <i>Amnoonviridae</i> in Fish

by Olivia M. H. Turnbull, Ayda Susana Ortiz-Baez, John-Sebastian Eden, Mang Shi, Jane E. Williamson, Troy F. Gaston, Yong-Zhen Zhang, Edward C. Holmes, Jemma L. Geoghegan
Published 2020-11-01

Transmission of Severe Acute Respiratory Syndrome Coronavirus 2 during Border Quarantine and Air Travel, New Zealand (Aotearoa)

by Nick Eichler, Craig Thornley, Tara Swadi, Tom Devine, Caroline McElnay, Jillian Sherwood, Cheryl Brunton, Felicity Williamson, Josh Freeman, Sarah Berger, Xiaoyun Ren, Matt Storey, Joep de Ligt, Jemma L. Geoghegan
Published 2021-05-01

Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand

by Jemma L. Geoghegan, Xiaoyun Ren, Matthew Storey, James Hadfield, Lauren Jelley, Sarah Jefferies, Jill Sherwood, Shevaun Paine, Sue Huang, Jordan Douglas, Fábio K. Mendes, Andrew Sporle, Michael G. Baker, David R. Murdoch, Nigel French, Colin R. Simpson, David Welch, Alexei J. Drummond, Edward C. Holmes, Sebastián Duchêne, Joep de Ligt
Published 2020-12-01

Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand

by Jemma L. Geoghegan, Jordan Douglas, Xiaoyun Ren, Matthew Storey, James Hadfield, Olin K. Silander, Nikki E. Freed, Lauren Jelley, Sarah Jefferies, Jillian Sherwood, Shevaun Paine, Sue Huang, Andrew Sporle, Michael G. Baker, David R. Murdoch, Alexei J. Drummond, David Welch, Colin R. Simpson, Nigel French, Edward C. Holmes, Joep de Ligt
Published 2021-05-01

COVID-19 vaccine strategies for Aotearoa New Zealand: a mathematical modelling study

by Trung Nguyen, PhD, Mehnaz Adnan, PhD, Binh P Nguyen, PhD, Joep de Ligt, PhD, Jemma L Geoghegan, PhD, Richard Dean, MSc, Sarah Jefferies, MD, Michael G Baker, MBChB, Winston KG Seah, DrEng, Andrew A Sporle, MA(Hons), Nigel Peter French, PhD, David R Murdoch, MD, David Welch, PhD, Colin R Simpson, PhD
Published 2021-10-01

Genomic Evidence of In-Flight Transmission of SARS-CoV-2 Despite Predeparture Testing

by Tara Swadi, Jemma L. Geoghegan, Tom Devine, Caroline McElnay, Jillian Sherwood, Phil Shoemack, Xiaoyun Ren, Matt Storey, Sarah Jefferies, Erasmus Smit, James Hadfield, Aoife Kenny, Lauren Jelley, Andrew Sporle, Andrea McNeill, G. Edwin Reynolds, Kip Mouldey, Lindsay Lowe, Gerard Sonder, Alexei J. Drummond, Sue Huang, David Welch, Edward C. Holmes, Nigel French, Colin R. Simpson, Joep de Ligt
Published 2021-03-01