Rapid, Paralog-Sensitive CNV Analysis of 2457 Human Genomes Using QuicK-mer2

by Feichen Shen, Jeffrey M. Kidd
Published 2020-01-01

Analysis of the canid Y-chromosome phylogeny using short-read sequencing data reveals the presence of distinct haplogroups among Neolithic European dogs

by Matthew T. Oetjens, Axel Martin, Krishna R. Veeramah, Jeffrey M. Kidd
Published 2018-05-01

Population stratification of a common APOBEC gene deletion polymorphism.

by Jeffrey M Kidd, Tera L Newman, Eray Tuzun, Rajinder Kaul, Evan E Eichler
Published 2007-04-01

Origin and recent expansion of an endogenous gammaretroviral lineage in domestic and wild canids

by Julia V. Halo, Amanda L. Pendleton, Abigail S. Jarosz, Robert J. Gifford, Malika L. Day, Jeffrey M. Kidd
Published 2019-03-01

Spliced integrated retrotransposed element (SpIRE) formation in the human genome.

by Peter A Larson, John B Moldovan, Naveen Jasti, Jeffrey M Kidd, Christine R Beck, John V Moran
Published 2018-03-01

Comparison of village dog and wolf genomes highlights the role of the neural crest in dog domestication

by Amanda L. Pendleton, Feichen Shen, Angela M. Taravella, Sarah Emery, Krishna R. Veeramah, Adam R. Boyko, Jeffrey M. Kidd
Published 2018-06-01

Death and resurrection of the human IRGM gene.

by Cemalettin Bekpen, Tomas Marques-Bonet, Can Alkan, Francesca Antonacci, Maria Bruna Leogrande, Mario Ventura, Jeffrey M Kidd, Priscillia Siswara, Jonathan C Howard, Evan E Eichler
Published 2009-03-01

Transcriptome sequencing from diverse human populations reveals differentiated regulatory architecture.

by Alicia R Martin, Helio A Costa, Tuuli Lappalainen, Brenna M Henn, Jeffrey M Kidd, Muh-Ching Yee, Fabian Grubert, Howard M Cann, Michael Snyder, Stephen B Montgomery, Carlos D Bustamante
Published 2014-08-01

Stable integrant-specific differences in bimodal HIV-1 expression patterns revealed by high-throughput analysis.

by David F Read, Edmond Atindaana, Kalyani Pyaram, Feng Yang, Sarah Emery, Anna Cheong, Katherine R Nakama, Cleo Burnett, Erin T Larragoite, Emilie Battivelli, Eric Verdin, Vicente Planelles, Cheong-Hee Chang, Alice Telesnitsky, Jeffrey M Kidd
Published 2019-10-01

Dog10K_Boxer_Tasha_1.0: A Long-Read Assembly of the Dog Reference Genome

by Vidhya Jagannathan, Christophe Hitte, Jeffrey M. Kidd, Patrick Masterson, Terence D. Murphy, Sarah Emery, Brian Davis, Reuben M. Buckley, Yan-Hu Liu, Xiang-Quan Zhang, Tosso Leeb, Ya-Ping Zhang, Elaine A. Ostrander, Guo-Dong Wang
Published 2021-05-01

Ancient European dog genomes reveal continuity since the Early Neolithic

by Laura R. Botigué, Shiya Song, Amelie Scheu, Shyamalika Gopalan, Amanda L. Pendleton, Matthew Oetjens, Angela M. Taravella, Timo Seregély, Andrea Zeeb-Lanz, Rose-Marie Arbogast, Dean Bobo, Kevin Daly, Martina Unterländer, Joachim Burger, Jeffrey M. Kidd, Krishna R. Veeramah
Published 2017-07-01

Variation of BMP3 contributes to dog breed skull diversity.

by Jeffrey J Schoenebeck, Sarah A Hutchinson, Alexandra Byers, Holly C Beale, Blake Carrington, Daniel L Faden, Maud Rimbault, Brennan Decker, Jeffrey M Kidd, Raman Sood, Adam R Boyko, John W Fondon, Robert K Wayne, Carlos D Bustamante, Brian Ciruna, Elaine A Ostrander
Published 2012-01-01

Correction: A 32 kb Critical Region Excluding Y402H in CFH Mediates Risk for Age-Related Macular Degeneration.

by Theru A Sivakumaran, Robert P Igo, Jeffrey M Kidd, Andy Itsara, Laura J Kopplin, Wei Chen, Stephanie A Hagstrom, Neal S Peachey, Peter J Francis, Michael L Klein, Emily Y Chew, Vedam L Ramprasad, Wan-Ting Tay, Paul Mitchell, Mark Seielstad, Dwight E Stambolian, Albert O Edwards, Kristine E Lee, Dmitry V Leontiev, Gyungah Jun, Yang Wang, Liping Tian, Feiyou Qiu, Alice K Henning, Thomas LaFramboise, Parveen Sen, Manoharan Aarthi, Ronnie George, Rajiv Raman, Manmath Kumar Das, Lingam Vijaya, Govindasamy Kumaramanickavel, Tien Y Wong, Anand Swaroop, Goncalo R Abecasis, Ronald Klein, Barbara E K Klein, Deborah A Nickerson, Evan E Eichler, Sudha K Iyengar
Published 2018-01-01

A 32 kb critical region excluding Y402H in CFH mediates risk for age-related macular degeneration.

by Theru A Sivakumaran, Robert P Igo, Jeffrey M Kidd, Andy Itsara, Laura J Kopplin, Wei Chen, Stephanie A Hagstrom, Neal S Peachey, Peter J Francis, Michael L Klein, Emily Y Chew, Vedam L Ramprasad, Wan-Ting Tay, Paul Mitchell, Mark Seielstad, Dwight E Stambolian, Albert O Edwards, Kristine E Lee, Dmitry V Leontiev, Gyungah Jun, Yang Wang, Liping Tian, Feiyou Qiu, Alice K Henning, Thomas LaFramboise, Parveen Sen, Manoharan Aarthi, Ronnie George, Rajiv Raman, Manmath Kumar Das, Lingam Vijaya, Govindasamy Kumaramanickavel, Tien Y Wong, Anand Swaroop, Goncalo R Abecasis, Ronald Klein, Barbara E K Klein, Deborah A Nickerson, Evan E Eichler, Sudha K Iyengar
Published 2011-01-01

Comprehensive identification of somatic nucleotide variants in human brain tissue

by Yifan Wang, Taejeong Bae, Jeremy Thorpe, Maxwell A. Sherman, Attila G. Jones, Sean Cho, Kenneth Daily, Yanmei Dou, Javier Ganz, Alon Galor, Irene Lobon, Reenal Pattni, Chaggai Rosenbluh, Simone Tomasi, Livia Tomasini, Xiaoxu Yang, Bo Zhou, Schahram Akbarian, Laurel L. Ball, Sara Bizzotto, Sarah B. Emery, Ryan Doan, Liana Fasching, Yeongjun Jang, David Juan, Esther Lizano, Lovelace J. Luquette, John B. Moldovan, Rujuta Narurkar, Matthew T. Oetjens, Rachel E. Rodin, Shobana Sekar, Joo Heon Shin, Eduardo Soriano, Richard E. Straub, Weichen Zhou, Andrew Chess, Joseph G. Gleeson, Tomas Marquès-Bonet, Peter J. Park, Mette A. Peters, Jonathan Pevsner, Christopher A. Walsh, Daniel R. Weinberger, Brain Somatic Mosaicism Network, Flora M. Vaccarino, John V. Moran, Alexander E. Urban, Jeffrey M. Kidd, Ryan E. Mills, Alexej Abyzov
Published 2021-03-01