CytoConverter: a web-based tool to convert karyotypes to genomic coordinates

by Janet Wang, Thomas LaFramboise
Published 2019-09-01

Detection and quantification of mitochondrial DNA deletions from next-generation sequence data

by Colleen M. Bosworth, Sneha Grandhi, Meetha P. Gould, Thomas LaFramboise
Published 2017-10-01

Allelic selection of amplicons in glioblastoma revealed by combining somatic and germline analysis.

by Thomas LaFramboise, Ninad Dewal, Katherine Wilkins, Itsik Pe'er, Matthew L Freedman
Published 2010-09-01

Correction: PCR-Free Enrichment of Mitochondrial DNA from Human Blood and Cell Lines for High Quality Next-Generation DNA Sequencing.

by Meetha P Gould, Colleen M Bosworth, Sarah McMahon, Sneha Grandhi, Brian T Grimberg, Thomas LaFramboise
Published 2016-01-01

PCR-Free Enrichment of Mitochondrial DNA from Human Blood and Cell Lines for High Quality Next-Generation DNA Sequencing.

by Meetha P Gould, Colleen M Bosworth, Sarah McMahon, Sneha Grandhi, Brian T Grimberg, Thomas LaFramboise
Published 2015-01-01

The DNMT1-associated lincRNA DACOR1 reprograms genome-wide DNA methylation in colon cancer

by Saigopal Somasundaram, Megan E Forrest, Helen Moinova, Allison Cohen, Vinay Varadan, Thomas LaFramboise, Sanford Markowitz, Ahmad M Khalil
Published 2018-10-01

Unexpected cancer-predisposition gene variants in Cowden syndrome and Bannayan-Riley-Ruvalcaba syndrome patients without underlying germline PTEN mutations.

by Lamis Yehia, Ying Ni, Kaitlin Sesock, Farshad Niazi, Benjamin Fletcher, Hannah Jin Lian Chen, Thomas LaFramboise, Charis Eng
Published 2018-04-01

Allele-specific amplification in cancer revealed by SNP array analysis.

by Thomas LaFramboise, Barbara A Weir, Xiaojun Zhao, Rameen Beroukhim, Cheng Li, David Harrington, William R Sellers, Matthew Meyerson
Published 2005-11-01

Colon Cancer-Upregulated Long Non-Coding RNA lincDUSP Regulates Cell Cycle Genes and Potentiates Resistance to Apoptosis

by Megan E. Forrest, Alina Saiakhova, Lydia Beard, David A. Buchner, Peter C. Scacheri, Thomas LaFramboise, Sanford Markowitz, Ahmad M. Khalil
Published 2018-05-01

Exonic variants undergoing allele-specific selection in cancers

by Qiyuan Li, Yuanyuan Zeng, Janet Wang, Hongkun Fang, Jintao Guo, Liying Yu, Taoling Zhong, Chaoqun Xu, Matthew Freedman, Thomas LaFramboise
Published 2021-05-01

Mitochondrial DNA Content Is Linked to Cardiovascular Disease Patient Phenotypes

by Ruipeng Wei, Ying Ni, Peter Bazeley, Sneha Grandhi, Janet Wang, Samuel T. Li, Stanley L. Hazen, W. H. Wilson Tang, Thomas LaFramboise
Published 2021-02-01

Characterizing mutational heterogeneity in a glioblastoma patient with double recurrence.

by Gabrielle C Nickel, Jill Barnholtz-Sloan, Meetha P Gould, Sarah McMahon, Andrea Cohen, Mark D Adams, Kishore Guda, Mark Cohen, Andrew E Sloan, Thomas LaFramboise
Published 2012-01-01

Invariant patterns of clonal succession determine specific clinical features of myelodysplastic syndromes

by Yasunobu Nagata, Hideki Makishima, Cassandra M. Kerr, Bartlomiej P. Przychodzen, Mai Aly, Abhinav Goyal, Hassan Awada, Mohammad Fahad Asad, Teodora Kuzmanovic, Hiromichi Suzuki, Tetsuichi Yoshizato, Kenichi Yoshida, Kenichi Chiba, Hiroko Tanaka, Yuichi Shiraishi, Satoru Miyano, Sudipto Mukherjee, Thomas LaFramboise, Aziz Nazha, Mikkael A. Sekeres, Tomas Radivoyevitch, Torsten Haferlach, Seishi Ogawa, Jaroslaw P. Maciejewski
Published 2019-11-01

Oncogenic PIK3CA mutations reprogram glutamine metabolism in colorectal cancer

by Yujun Hao, Yardena Samuels, Qingling Li, Dawid Krokowski, Bo-Jhih Guan, Chao Wang, Zhicheng Jin, Bohan Dong, Bo Cao, Xiujing Feng, Min Xiang, Claire Xu, Stephen Fink, Neal J. Meropol, Yan Xu, Ronald A. Conlon, Sanford Markowitz, Kenneth W. Kinzler, Victor E. Velculescu, Henri Brunengraber, Joseph E. Willis, Thomas LaFramboise, Maria Hatzoglou, Guo-Fang Zhang, Bert Vogelstein, Zhenghe Wang
Published 2016-06-01

Correction: A 32 kb Critical Region Excluding Y402H in CFH Mediates Risk for Age-Related Macular Degeneration.

by Theru A Sivakumaran, Robert P Igo, Jeffrey M Kidd, Andy Itsara, Laura J Kopplin, Wei Chen, Stephanie A Hagstrom, Neal S Peachey, Peter J Francis, Michael L Klein, Emily Y Chew, Vedam L Ramprasad, Wan-Ting Tay, Paul Mitchell, Mark Seielstad, Dwight E Stambolian, Albert O Edwards, Kristine E Lee, Dmitry V Leontiev, Gyungah Jun, Yang Wang, Liping Tian, Feiyou Qiu, Alice K Henning, Thomas LaFramboise, Parveen Sen, Manoharan Aarthi, Ronnie George, Rajiv Raman, Manmath Kumar Das, Lingam Vijaya, Govindasamy Kumaramanickavel, Tien Y Wong, Anand Swaroop, Goncalo R Abecasis, Ronald Klein, Barbara E K Klein, Deborah A Nickerson, Evan E Eichler, Sudha K Iyengar
Published 2018-01-01

A 32 kb critical region excluding Y402H in CFH mediates risk for age-related macular degeneration.

by Theru A Sivakumaran, Robert P Igo, Jeffrey M Kidd, Andy Itsara, Laura J Kopplin, Wei Chen, Stephanie A Hagstrom, Neal S Peachey, Peter J Francis, Michael L Klein, Emily Y Chew, Vedam L Ramprasad, Wan-Ting Tay, Paul Mitchell, Mark Seielstad, Dwight E Stambolian, Albert O Edwards, Kristine E Lee, Dmitry V Leontiev, Gyungah Jun, Yang Wang, Liping Tian, Feiyou Qiu, Alice K Henning, Thomas LaFramboise, Parveen Sen, Manoharan Aarthi, Ronnie George, Rajiv Raman, Manmath Kumar Das, Lingam Vijaya, Govindasamy Kumaramanickavel, Tien Y Wong, Anand Swaroop, Goncalo R Abecasis, Ronald Klein, Barbara E K Klein, Deborah A Nickerson, Evan E Eichler, Sudha K Iyengar
Published 2011-01-01