Host-associated and free-living phage communities differ profoundly in phylogenetic composition.

by J Gregory Caporaso, Rob Knight, Scott T Kelley
Published 2011-02-01

SSUnique: Detecting Sequence Novelty in Microbiome Surveys

by Michael D. J. Lynch, Josh D. Neufeld, J. Gregory Caporaso
Published 2016-12-01

Correction: The Ecology of Microbial Communities Associated with Macrocystis pyrifera

by Vanessa K. Michelou, J. Gregory Caporaso, Rob Knight, Stephen R. Palumbi
Published 2013-01-01

The Ecology of Microbial Communities Associated with Macrocystis pyrifera.

by Vanessa K Michelou, J Gregory Caporaso, Rob Knight, Stephen R Palumbi
Published 2013-01-01

Correction: The Ecology of Microbial Communities Associated with.

by Vanessa K. Michelou, J. Gregory Caporaso, Rob Knight, Stephen R. Palumbi
Published 2013-01-01

The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes

by Jason W. Sahl, J. Gregory Caporaso, David A. Rasko, Paul Keim
Published 2014-04-01

Phylogenetic farming: Can evolutionary history predict crop rotation via the soil microbiome?

by Ian Kaplan, Nicholas A. Bokulich, J. Gregory Caporaso, Laramy S. Enders, Wadih Ghanem, Kathryn S. Ingerslew
Published 2020-09-01

Rapidly Processed Stool Swabs Approximate Stool Microbiota Profiles

by Nicholas A. Bokulich, Juan Maldonado, Dae-Wook Kang, Rosa Krajmalnik-Brown, J. Gregory Caporaso
Published 2019-04-01

Species abundance information improves sequence taxonomy classification accuracy

by Benjamin D. Kaehler, Nicholas A. Bokulich, Daniel McDonald, Rob Knight, J. Gregory Caporaso, Gavin A. Huttley
Published 2019-10-01

Bacterial diversity in two Neonatal Intensive Care Units (NICUs).

by Krissi M Hewitt, Frank L Mannino, Antonio Gonzalez, John H Chase, J Gregory Caporaso, Rob Knight, Scott T Kelley
Published 2013-01-01

Extensive Core Microbiome in Drone-Captured Whale Blow Supports a Framework for Health Monitoring

by Amy Apprill, Carolyn A. Miller, Michael J. Moore, John W. Durban, Holly Fearnbach, Lance G. Barrett-Lennard, J. Gregory Caporaso
Published 2017-10-01

q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data

by Nicholas A. Bokulich, Matthew R. Dillon, Yilong Zhang, Jai Ram Rideout, Evan Bolyen, Huilin Li, Paul S. Albert, J. Gregory Caporaso
Published 2018-11-01

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

by Nicholas A. Bokulich, Benjamin D. Kaehler, Jai Ram Rideout, Matthew Dillon, Evan Bolyen, Rob Knight, Gavin A. Huttley, J. Gregory Caporaso
Published 2018-05-01

Geography and Location Are the Primary Drivers of Office Microbiome Composition

by John Chase, Jennifer Fouquier, Mahnaz Zare, Derek L. Sonderegger, Rob Knight, Scott T. Kelley, Jeffrey Siegel, J. Gregory Caporaso, Jack A. Gilbert
Published 2016-04-01

Impact of Different Exercise Modalities on the Human Gut Microbiome

by Dierdra Bycura, Anthony C. Santos, Arron Shiffer, Shari Kyman, Kyle Winfree, Jay Sutliffe, Talima Pearson, Derek Sonderegger, Emily Cope, J. Gregory Caporaso
Published 2021-01-01

Multi-omics Analysis of Periodontal Pocket Microbial Communities Pre- and Posttreatment

by Katy J. Califf, Karen Schwarzberg-Lipson, Neha Garg, Sean M. Gibbons, J. Gregory Caporaso, Jørgen Slots, Chloe Cohen, Pieter C. Dorrestein, Scott T. Kelley, Nicola Segata
Published 2017-06-01

The personal human oral microbiome obscures the effects of treatment on periodontal disease.

by Karen Schwarzberg, Rosalin Le, Balambal Bharti, Suzanne Lindsay, Giorgio Casaburi, Francesco Salvatore, Mohamed H Saber, Faisal Alonaizan, Jørgen Slots, Roberta A Gottlieb, J Gregory Caporaso, Scott T Kelley
Published 2014-01-01

Reduced Epithelial Na+/H+ Exchange Drives Gut Microbial Dysbiosis and Promotes Inflammatory Response in T Cell-Mediated Murine Colitis.

by Daniel Laubitz, Christy A Harrison, Monica T Midura-Kiela, Rajalakshmy Ramalingam, Claire B Larmonier, John H Chase, J Gregory Caporaso, David G Besselsen, Fayez K Ghishan, Pawel R Kiela
Published 2016-01-01

Significant Impacts of Increasing Aridity on the Arid Soil Microbiome

by Julia W. Neilson, Katy Califf, Cesar Cardona, Audrey Copeland, Will van Treuren, Karen L. Josephson, Rob Knight, Jack A. Gilbert, Jay Quade, J. Gregory Caporaso, Raina M. Maier, Haiyan Chu
Published 2017-05-01

mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking

by Nicholas A. Bokulich, Jai Ram Rideout, William G. Mercurio, Arron Shiffer, Benjamin Wolfe, Corinne F. Maurice, Rachel J. Dutton, Peter J. Turnbaugh, Rob Knight, J. Gregory Caporaso, Josh D. Neufeld
Published 2016-10-01