On the Road to Strain-Resolved Comparative Metagenomics

by Nicola Segata
Published 2018-03-01

Toward an efficient method of identifying core genes for evolutionary and functional microbial phylogenies.

by Nicola Segata, Curtis Huttenhower
Published 2011-01-01

At the forefront of the sequencing revolution—notes from the RNGS19 conference

by Sander Wuyts, Nicola Segata
Published 2019-05-01

Multiple levels of the unknown in microbiome research

by Andrew Maltez Thomas, Nicola Segata
Published 2019-06-01

Simultaneous quantification of multiple bacteria by the BactoChip microarray designed to target species-specific marker genes.

by Annalisa Ballarini, Nicola Segata, Curtis Huttenhower, Olivier Jousson
Published 2013-01-01

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights.

by Edoardo Pasolli, Duy Tin Truong, Faizan Malik, Levi Waldron, Nicola Segata
Published 2016-07-01

Compact graphical representation of phylogenetic data and metadata with GraPhlAn

by Francesco Asnicar, George Weingart, Timothy L. Tickle, Curtis Huttenhower, Nicola Segata
Published 2015-06-01

Profiling microbial strains in urban environments using metagenomic sequencing data

by Moreno Zolfo, Francesco Asnicar, Paolo Manghi, Edoardo Pasolli, Adrian Tett, Nicola Segata
Published 2018-05-01

Large scale genome reconstructions illuminate Wolbachia evolution

by Matthias Scholz, Davide Albanese, Kieran Tuohy, Claudio Donati, Nicola Segata, Omar Rota-Stabelli
Published 2020-10-01

High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED.

by James Kaminski, Molly K Gibson, Eric A Franzosa, Nicola Segata, Gautam Dantas, Curtis Huttenhower
Published 2015-12-01

Machine Learning Leveraging Genomes from Metagenomes Identifies Influential Antibiotic Resistance Genes in the Infant Gut Microbiome

by Sumayah F. Rahman, Matthew R. Olm, Michael J. Morowitz, Jillian F. Banfield, Nicola Segata
Published 2018-01-01

Microbial co-occurrence relationships in the human microbiome.

by Karoline Faust, J Fah Sathirapongsasuti, Jacques Izard, Nicola Segata, Dirk Gevers, Jeroen Raes, Curtis Huttenhower
Published 2012-01-01

Effect of Gluten-Free Diet on Gut Microbiota Composition in Patients with Celiac Disease and Non-Celiac Gluten/Wheat Sensitivity

by Giacomo Caio, Lisa Lungaro, Nicola Segata, Matteo Guarino, Giorgio Zoli, Umberto Volta, Roberto De Giorgio
Published 2020-06-01

The Signal and the Noise: Characteristics of Antisense RNA in Complex Microbial Communities

by Thomas Yssing Michaelsen, Jakob Brandt, Caitlin Margaret Singleton, Rasmus Hansen Kirkegaard, Johanna Wiesinger, Nicola Segata, Mads Albertsen
Published 2020-02-01

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets.

by Omry Koren, Dan Knights, Antonio Gonzalez, Levi Waldron, Nicola Segata, Rob Knight, Curtis Huttenhower, Ruth E Ley
Published 2013-01-01

From Genomes to Phenotypes: Traitar, the Microbial Trait Analyzer

by Aaron Weimann, Kyra Mooren, Jeremy Frank, Phillip B. Pope, Andreas Bremges, Alice C. McHardy, Nicola Segata
Published 2016-12-01

The Microbe Directory: An annotated, searchable inventory of microbes’ characteristics [version 1; referees: 1 approved, 3 approved with reservations]

by Heba Shaaban, David A. Westfall, Rawhi Mohammad, David Danko, Daniela Bezdan, Ebrahim Afshinnekoo, Nicola Segata, Christopher E. Mason
Published 2018-01-01

Genomic and metagenomic insights into the microbial community of a thermal spring

by Renato Pedron, Alfonso Esposito, Irene Bianconi, Edoardo Pasolli, Adrian Tett, Francesco Asnicar, Mario Cristofolini, Nicola Segata, Olivier Jousson
Published 2019-01-01

Large-Scale Phylogenomics of the Lactobacillus casei Group Highlights Taxonomic Inconsistencies and Reveals Novel Clade-Associated Features

by Sander Wuyts, Stijn Wittouck, Ilke De Boeck, Camille N. Allonsius, Edoardo Pasolli, Nicola Segata, Sarah Lebeer, Pieter C. Dorrestein
Published 2017-08-01

Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants

by Doyle V. Ward, Matthias Scholz, Moreno Zolfo, Diana H. Taft, Kurt R. Schibler, Adrian Tett, Nicola Segata, Ardythe L. Morrow
Published 2016-03-01