Viral communities of the human gut: metagenomic analysis of composition and dynamics

by Varun Aggarwala, Guanxiang Liang, Frederic D. Bushman
Published 2017-10-01

Selection of target sites for mobile DNA integration in the human genome.

by Charles Berry, Sridhar Hannenhalli, Jeremy Leipzig, Frederic D Bushman
Published 2006-11-01

The interferon response inhibits HIV particle production by induction of TRIM22.

by Stephen D Barr, James R Smiley, Frederic D Bushman
Published 2008-02-01

Conservation of gene cassettes among diverse viruses of the human gut.

by Samuel Minot, Gary D Wu, James D Lewis, Frederic D Bushman
Published 2012-01-01

HTLV-1 integration into transcriptionally active genomic regions is associated with proviral expression and with HAM/TSP.

by Kiran N Meekings, Jeremy Leipzig, Frederic D Bushman, Graham P Taylor, Charles R M Bangham
Published 2008-03-01

A reverse transcription loop-mediated isothermal amplification assay optimized to detect multiple HIV subtypes.

by Karen E Ocwieja, Scott Sherrill-Mix, Changchun Liu, Jinzhao Song, Haim Bau, Frederic D Bushman
Published 2015-01-01

Bidirectional interactions between indomethacin and the murine intestinal microbiota

by Xue Liang, Kyle Bittinger, Xuanwen Li, Darrell R Abernethy, Frederic D Bushman, Garret A FitzGerald
Published 2015-12-01

Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts.

by Emily S Charlson, Kyle Bittinger, Jun Chen, Joshua M Diamond, Hongzhe Li, Ronald G Collman, Frederic D Bushman
Published 2012-01-01

Influence of the amino-terminal sequence on the structure and function of HIV integrase

by Grant Eilers, Kushol Gupta, Audrey Allen, Jeffrey Zhou, Young Hwang, Michael B. Cory, Frederic D. Bushman, Gregory Van Duyne
Published 2020-08-01

Succession in the gut microbiome following antibiotic and antibody therapies for Clostridium difficile.

by Gregory L Peterfreund, Lee E Vandivier, Rohini Sinha, Andre J Marozsan, William C Olson, Jun Zhu, Frederic D Bushman
Published 2012-01-01

Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents.

by Christian Hoffmann, Serena Dollive, Stephanie Grunberg, Jun Chen, Hongzhe Li, Gary D Wu, James D Lewis, Frederic D Bushman
Published 2013-01-01

Role of PSIP1/LEDGF/p75 in lentiviral infectivity and integration targeting.

by Heather M Marshall, Keshet Ronen, Charles Berry, Manuel Llano, Heidi Sutherland, Dyana Saenz, Wendy Bickmore, Eric Poeschla, Frederic D Bushman
Published 2007-12-01

Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments

by Erik L. Clarke, Louis J. Taylor, Chunyu Zhao, Andrew Connell, Jung-Jin Lee, Bryton Fett, Frederic D. Bushman, Kyle Bittinger
Published 2019-03-01

Investigating hospital Mycobacterium chelonae infection using whole genome sequencing and hybrid assembly.

by Christopher H Gu, Chunyu Zhao, Casey Hofstaedter, Pablo Tebas, Laurel Glaser, Robert Baldassano, Kyle Bittinger, Lisa M Mattei, Frederic D Bushman
Published 2020-01-01

Disordered microbial communities in the upper respiratory tract of cigarette smokers.

by Emily S Charlson, Jun Chen, Rebecca Custers-Allen, Kyle Bittinger, Hongzhe Li, Rohini Sinha, Jennifer Hwang, Frederic D Bushman, Ronald G Collman
Published 2010-12-01

Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences.

by Rick S Mitchell, Brett F Beitzel, Astrid R W Schroder, Paul Shinn, Huaming Chen, Charles C Berry, Joseph R Ecker, Frederic D Bushman
Published 2004-08-01

A role for glycolipid biosynthesis in severe fever with thrombocytopenia syndrome virus entry.

by Mary Jane Drake, Benjamin Brennan, Kenneth Briley, Stephen M Bart, Eric Sherman, Agnieszka M Szemiel, Madeleine Minutillo, Frederic D Bushman, Paul Bates
Published 2017-04-01

Directly infected resting CD4+T cells can produce HIV Gag without spreading infection in a model of HIV latency.

by Matthew J Pace, Erin H Graf, Luis M Agosto, Angela M Mexas, Frances Male, Troy Brady, Frederic D Bushman, Una O'Doherty
Published 2012-01-01

Correction: LEDGF/p75-Independent HIV-1 Replication Demonstrates a Role for HRP-2 and Remains Sensitive to Inhibition by LEDGINs.

by Rik Schrijvers, Jan De Rijck, Jonas Demeulemeester, Noritaka Adachi, Sofie Vets, Keshet Ronen, Frauke Christ, Frederic D Bushman, Zeger Debyser, Rik Gijsbers
Published 2020-09-01

LEDGF/p75-independent HIV-1 replication demonstrates a role for HRP-2 and remains sensitive to inhibition by LEDGINs.

by Rik Schrijvers, Jan De Rijck, Jonas Demeulemeester, Noritaka Adachi, Sofie Vets, Keshet Ronen, Frauke Christ, Frederic D Bushman, Zeger Debyser, Rik Gijsbers
Published 2012-01-01