Common alleles of CMT2 and NRPE1 are major determinants of CHH methylation variation in Arabidopsis thaliana.

by Eriko Sasaki, Taiji Kawakatsu, Joseph R Ecker, Magnus Nordborg
Published 2019-12-01

Dynamic DNA methylation reconfiguration during seed development and germination

by Taiji Kawakatsu, Joseph R. Nery, Rosa Castanon, Joseph R. Ecker
Published 2017-09-01

Author Correction: A B-ARR-mediated cytokinin transcriptional network directs hormone cross-regulation and shoot development

by Mingtang Xie, Hongyu Chen, Ling Huang, Ryan C. O’Neil, Maxim N. Shokhirev, Joseph R. Ecker
Published 2018-05-01

A B-ARR-mediated cytokinin transcriptional network directs hormone cross-regulation and shoot development

by Mingtang Xie, Hongyu Chen, Ling Huang, Ryan C. O’Neil, Maxim N. Shokhirev, Joseph R. Ecker
Published 2018-04-01

Cerebral Organoids Recapitulate Epigenomic Signatures of the Human Fetal Brain

by Chongyuan Luo, Madeline A. Lancaster, Rosa Castanon, Joseph R. Nery, Juergen A. Knoblich, Joseph R. Ecker
Published 2016-12-01

Auxin-sensitive Aux/IAA proteins mediate drought tolerance in Arabidopsis by regulating glucosinolate levels

by Mohammad Salehin, Baohua Li, Michelle Tang, Ella Katz, Liang Song, Joseph R. Ecker, Daniel J. Kliebenstein, Mark Estelle
Published 2019-09-01

EIN2-dependent regulation of acetylation of histone H3K14 and non-canonical histone H3K23 in ethylene signalling

by Fan Zhang, Bin Qi, Likai Wang, Bo Zhao, Siddharth Rode, Nathaniel D. Riggan, Joseph R. Ecker, Hong Qiao
Published 2016-10-01

Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements

by David Secco, Chuang Wang, Huixia Shou, Matthew D Schultz, Serge Chiarenza, Laurent Nussaume, Joseph R Ecker, James Whelan, Ryan Lister
Published 2015-07-01

High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell

by Todd P. Michael, Florian Jupe, Felix Bemm, S. Timothy Motley, Justin P. Sandoval, Christa Lanz, Olivier Loudet, Detlef Weigel, Joseph R. Ecker
Published 2018-02-01

Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences.

by Rick S Mitchell, Brett F Beitzel, Astrid R W Schroder, Paul Shinn, Huaming Chen, Charles C Berry, Joseph R Ecker, Frederic D Bushman
Published 2004-08-01

Transcriptional and epigenomic landscapes of CNS and non-CNS vascular endothelial cells

by Mark F Sabbagh, Jacob S Heng, Chongyuan Luo, Rosa G Castanon, Joseph R Nery, Amir Rattner, Loyal A Goff, Joseph R Ecker, Jeremy Nathans
Published 2018-09-01

The Arabidopsis Auxin Receptor F-Box Proteins AFB4 and AFB5 Are Required for Response to the Synthetic Auxin Picloram

by Michael J. Prigge, Kathleen Greenham, Yi Zhang, Aaron Santner, Cristina Castillejo, Andrew M. Mutka, Ronan C. O’Malley, Joseph R. Ecker, Barbara N. Kunkel, Mark Estelle
Published 2016-05-01

Two plant viral suppressors of silencing require the ethylene-inducible host transcription factor RAV2 to block RNA silencing.

by Matthew W Endres, Brian D Gregory, Zhihuan Gao, Amy Wahba Foreman, Sizolwenkosi Mlotshwa, Xin Ge, Gail J Pruss, Joseph R Ecker, Lewis H Bowman, Vicki Vance
Published 2010-01-01

A Genome-Scale Resource for the Functional Characterization of Arabidopsis Transcription Factors

by Jose L. Pruneda-Paz, Ghislain Breton, Dawn H. Nagel, S. Earl Kang, Katia Bonaldi, Colleen J. Doherty, Stephanie Ravelo, Mary Galli, Joseph R. Ecker, Steve A. Kay
Published 2014-07-01

Activity-dependent modulation of synapse-regulating genes in astrocytes

by Isabella Farhy-Tselnicker, Matthew M Boisvert, Hanqing Liu, Cari Dowling, Galina A Erikson, Elena Blanco-Suarez, Chen Farhy, Maxim N Shokhirev, Joseph R Ecker, Nicola J Allen
Published 2021-09-01

The complex architecture and epigenomic impact of plant T-DNA insertions.

by Florian Jupe, Angeline C Rivkin, Todd P Michael, Mark Zander, S Timothy Motley, Justin P Sandoval, R Keith Slotkin, Huaming Chen, Rosa Castanon, Joseph R Nery, Joseph R Ecker
Published 2019-01-01

Global DNA methylation remodeling during direct reprogramming of fibroblasts to neurons

by Chongyuan Luo, Qian Yi Lee, Orly Wapinski, Rosa Castanon, Joseph R Nery, Moritz Mall, Michael S Kareta, Sean M Cullen, Margaret A Goodell, Howard Y Chang, Marius Wernig, Joseph R Ecker
Published 2019-01-01

Retroviral DNA integration: viral and cellular determinants of target-site selection.

by Mary K Lewinski, Masahiro Yamashita, Michael Emerman, Angela Ciuffi, Heather Marshall, Gregory Crawford, Francis Collins, Paul Shinn, Jeremy Leipzig, Sridhar Hannenhalli, Charles C Berry, Joseph R Ecker, Frederic D Bushman
Published 2006-06-01

CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion- and Ca(2+)-permeable channels and stomatal closure.

by Izumi C Mori, Yoshiyuki Murata, Yingzhen Yang, Shintaro Munemasa, Yong-Fei Wang, Shannon Andreoli, Hervé Tiriac, Jose M Alonso, Jeffery F Harper, Joseph R Ecker, June M Kwak, Julian I Schroeder
Published 2006-10-01

Epigenomic landscapes of retinal rods and cones

by Alisa Mo, Chongyuan Luo, Fred P Davis, Eran A Mukamel, Gilbert L Henry, Joseph R Nery, Mark A Urich, Serge Picard, Ryan Lister, Sean R Eddy, Michael A Beer, Joseph R Ecker, Jeremy Nathans
Published 2016-03-01