HiMMe: using genetic patterns as a proxy for genome assembly reliability assessment

by Jordi Abante, Noushin Ghaffari, Charles D. Johnson, Aniruddha Datta
Published 2017-09-01

Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing

by Bin Tian, Shichen Wang, Timothy C. Todd, Charles D. Johnson, Guiliang Tang, Harold N. Trick
Published 2017-08-01

Accurate Genomic Predictions for Chronic Wasting Disease in U.S. White-Tailed Deer

by Christopher M. Seabury, David L. Oldeschulte, Eric K. Bhattarai, Dhruti Legare, Pamela J. Ferro, Richard P. Metz, Charles D. Johnson, Mitchell A. Lockwood, Tracy A. Nichols
Published 2020-04-01

RNA-seq analysis reveals different drought tolerance mechanisms in two broadly adapted wheat cultivars ‘TAM 111’ and ‘TAM 112’

by Chenggen Chu, Shichen Wang, Li Paetzold, Zhen Wang, Kele Hui, Jackie C. Rudd, Qingwu Xue, Amir M. H. Ibrahim, Richard Metz, Charles D. Johnson, Charles M. Rush, Shuyu Liu
Published 2021-02-01

Raw pacific biosciences and illumina sequencing reads and assembled genome data for the cattle ticks Rhipicephalus microplus and Rhipicephalus annulatus

by Felix D. Guerrero, Noushin Ghaffari, Kylie G. Bendele, Richard P. Metz, C. Michael Dickens, Philip D. Blood, Jason Tidwell, Robert J. Miller, Adalberto A. Pérez de León, Pete D. Teel, Charles D. Johnson
Published 2021-04-01

A draft de novo genome assembly for the northern bobwhite (Colinus virginianus) reveals evidence for a rapid decline in effective population size beginning in the Late Pleistocene.

by Yvette A Halley, Scot E Dowd, Jared E Decker, Paul M Seabury, Eric Bhattarai, Charles D Johnson, Dale Rollins, Ian R Tizard, Donald J Brightsmith, Markus J Peterson, Jeremy F Taylor, Christopher M Seabury
Published 2014-01-01

Northern Bobwhite (Colinus virginianus) Mitochondrial Population Genomics Reveals Structure, Divergence, and Evidence for Heteroplasmy.

by Yvette A Halley, David L Oldeschulte, Eric K Bhattarai, Joshua Hill, Richard P Metz, Charles D Johnson, Steven M Presley, Rebekah E Ruzicka, Dale Rollins, Markus J Peterson, William J Murphy, Christopher M Seabury
Published 2015-01-01

Genome wide identification of QTL associated with yield and yield components in two popular wheat cultivars TAM 111 and TAM 112.

by Yan Yang, Smit Dhakal, Chenggen Chu, Shichen Wang, Qingwu Xue, Jackie C Rudd, Amir M H Ibrahim, Kirk Jessup, Jason Baker, Maria Pilar Fuentealba, Ravindra Devkota, Shannon Baker, Charles D Johnson, Richard Metz, Shuyu Liu
Published 2020-01-01

Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity a...

by David L. Oldeschulte, Yvette A. Halley, Miranda L. Wilson, Eric K. Bhattarai, Wesley Brashear, Joshua Hill, Richard P. Metz, Charles D. Johnson, Dale Rollins, Markus J. Peterson, Derek M. Bickhart, Jared E. Decker, John F. Sewell, Christopher M. Seabury
Published 2017-09-01

Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

by Chenxi Qiu, Huiyan Jin, Irina Vvedenskaya, Jordi Abante Llenas, Tingting Zhao, Indranil Malik, Alex M. Visbisky, Scott L. Schwartz, Ping Cui, Pavel Čabart, Kang Hoo Han, William K. M. Lai, Richard P. Metz, Charles D. Johnson, Sing-Hoi Sze, B. Franklin Pugh, Bryce E. Nickels, Craig D. Kaplan
Published 2020-06-01

Horse Y chromosome assembly displays unique evolutionary features and putative stallion fertility genes

by Jan E. Janečka, Brian W. Davis, Sharmila Ghosh, Nandina Paria, Pranab J. Das, Ludovic Orlando, Mikkel Schubert, Martin K. Nielsen, Tom A. E. Stout, Wesley Brashear, Gang Li, Charles D. Johnson, Richard P. Metz, Al Muatasim Al Zadjali, Charles C. Love, Dickson D. Varner, Daniel W. Bellott, William J. Murphy, Bhanu P. Chowdhary, Terje Raudsepp
Published 2018-07-01

The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901

by Felix D. Guerrero, Kylie G. Bendele, Noushin Ghaffari, Joseph Guhlin, Kristene R. Gedye, Kevin E. Lawrence, Peter K. Dearden, Thomas W.R. Harrop, Allen C.G. Heath, Yanni Lun, Richard P. Metz, Pete Teel, Adalberto Perez de Leon, Patrick J. Biggs, William E. Pomroy, Charles D. Johnson, Philip D. Blood, Stanley E. Bellgard, Daniel M. Tompkins
Published 2019-12-01