Morphology-Guided Graph Search for Untangling Objects: C. elegans Analysis

by Raviv, T. Riklin, Ljosa, V., Conery, Annie L., Ausubel, Frederick M., Carpenter, Anne E., Golland, Polina, Wahlby, C.
Published 2014

Resolving clustered worms via probabilistic shape models

by Wahlby, Carolina, Riklin-Raviv, Tammy, Ljosa, Vebjorn, Conery, Annie L., Golland, Polina, Ausubel, Frederick M., Carpenter, Anne E.
Published 2011

Resolving cell state in iPSC-derived human neural samples with multiplexed fluorescence imaging

by Tomov, Martin L, O'Neil, Alison, Abbasi, Hamdah S, Cimini, Beth A, Carpenter, Anne E, Rubin, Lee L, Bathe, Mark
Published 2021

Resolving cell state in iPSC-derived human neural samples with multiplexed fluorescence imaging

by Tomov, Martin L, O'Neil, Alison, Abbasi, Hamdah S, Cimini, Beth A, Carpenter, Anne E, Rubin, Lee L, Bathe, Mark
Published 2022

Molecular diversity of glutamatergic and GABAergic synapses from multiplexed fluorescence imaging

by Danielson, Eric, Perez de Arce, Karen, Cimini, Beth, Wamhoff, Eike-Christian, Singh, Shantanu, Cottrell, Jeffrey R, Carpenter, Anne E, Bathe, Mark
Published 2021

High Content Image Analysis Identifies Novel Regulators of Synaptogenesis in a High-Throughput RNAi Screen of Primary Neurons

by Logan, David J., Saulnier, Jessica, Lam, Daniel, Johnson, Caroline, Root, David E., Carpenter, Anne E., Sabatini, Bernardo L., Nieland, Thomas J
Published 2014

Molecular diversity of glutamatergic and GABAergic synapses from multiplexed fluorescence imaging

by Danielson, Eric, Perez de Arce, Karen, Cimini, Beth, Wamhoff, Eike-Christian, Singh, Shantanu, Cottrell, Jeffrey R, Carpenter, Anne E, Bathe, Mark
Published 2022

Identification of small molecules for human hepatocyte expansion and iPS differentiation

by Shan, Jing, Ross, Nathan T., Logan, David J., Thomas, David, Duncan, Stephen A., North, Trista E., Goessling, Wolfram, Carpenter, Anne E., Schwartz, Robert E., Bhatia, Sangeeta N
Published 2014

A Microscale Human Liver Platform that Supports the Hepatic Stages of Plasmodium falciparum and vivax

by March-Riera, Sandra, Ng, Shengyong, Velmurugan, Soundarapandian, Galstian, Ani, Shan, Jing, Logan, David J., Carpenter, Anne E., Thomas, David, Sim, B. Kim Lee, Mota, Maria M., Hoffman, Stephen L.
Published 2014

CellProfiler: image analysis software for identifying and quantifying cell phenotypes

by Carpenter, Anne E., Jones, Thouis R., Lamprecht, Michael R., Clarke, Colin, Kang, In Han, Friman, Ola, Guertin, David A., Chang, Joo Han, Lindquist, Robert A., Moffat, Jason, Golland, Polina, Sabatini, David
Published 2010

An image analysis toolbox for high-throughput C. elegans assays

by Kamentsky, Lee, Liu, Zihan H., Riklin-Raviv, Tammy, Conery, Annie L., O'Rourke, Eyleen J., Sokolnicki, Katherine L., Visvikis, Orane, Ljosa, Vebjorn, Irazoqui, Javier E., Golland, Polina, Ruvkun, Gary, Ausubel, Frederick M., Carpenter, Anne E., Wahlby, Carolina
Published 2014

mTOR Complex 1 Regulates Lipin 1 Localization to Control the SREBP Pathway

by Peterson, Timothy R, Sengupta, Shomit S, Harris, Thurl E, Carpenter, Anne E., Kang, Seong A., Balderas, Eric, Guertin, David A., Madden, Katherine L., Finck, Brian N, Sabatini, David M, Kang, Seong A., Peterson, Timothy Richard, Sengupta, Shomit, Sabatini, David
Published 2014

Keras R-CNN: library for cell detection in biological images using deep neural networks

by Hung, Jane, Goodman, Allen, Ravel, Deepali, Lopes, Stefanie C P, Rangel, Gabriel W, Nery, Odailton A, Malleret, Benoit, Nosten, Francois, Lacerda, Marcus V G, Ferreira, Marcelo U, Rénia, Laurent, Duraisingh, Manoj T, Costa, Fabio T M, Marti, Matthias, Carpenter, Anne E
Published 2021

Genome-scale RNAi on living-cell microarrays identifies novel regulators of Drosophila melanogaster TORC1-S6K pathway signaling

by Lindquist, Robert A., Ottina, Kathleen, Wheeler, Douglas B., Hsu, Peggy P., Thoreen, Carson C., Guertin, David A., Ali, Siraj M., Sengupta, Shomit, Shaul, Yoav D., Lamprecht, Michael R., Madden, Katherine L., Papallo, Adam R., Jones, Thouis R., Sabatini, David M., Carpenter, Anne E.
Published 2012

The bromodomain protein Brd4 insulates chromatin from DNA damage signalling

by Floyd, Scott R., Pacold, Michael E., Huang, Qiuying, Clarke, Scott M., Rameseder, Jonathan, Lee, Michael J., Blake, Emily J., Fydrych, Anna, Ho, Richard, Del Rosario, Amanda M., Root, David E., Carpenter, Anne E., Hahn, William C., Sabatini, David M., Chen, Clark C., White, Forest M., Bradner, James E., Yaffe, Michael B., Lam, Fred Chiu-Lai, Cannell, Ian Gordon, Bryson, Bryan D., Greenberger, Benjamin Aaron, Chen, Grace, Maffa, Amanda D.
Published 2014

ZFHX4 Interacts with the NuRD Core Member CHD4 and Regulates the Glioblastoma Tumor-Initiating Cell State

by Chudnovsky, Yakov, Kim, Dohoon, Zheng, Siyuan, Whyte, Warren A, Bansal, Mukesh, Bray, Mark-Anthony, Gopal, Shuba, Theisen, Matthew A, Bilodeau, Steve, Thiru, Prathapan, Muffat, Julien, Yilmaz, Omer, Mitalipova, Maya, Woolard, Kevin, Lee, Jeongwu, Nishimura, Riko, Sakata, Nobuo, Fine, Howard A., Carpenter, Anne E., Silver, Serena J., Verhaak, Roel G.W, Califano, Andrea, Young, Richard A., Ligon, Keith L., Mellinghoff, Ingo K., Root, David E., Hahn, William C., Chheda, Milan G., Sabatini, David, Whyte, Warren Anthony
Published 2014

CellProfiler Analyst: data exploration and analysis software for complex image-based screens

by Wheeler, Douglas B., Kang, In Han, Golland, Polina, Papallo, Adam, Lindquist, Robert A., Jones, Thouis R., Van Dyk, Anne Carpenter, Sabatini, David
Published 2009