Accelerating the Gillespie τ-Leaping Method using graphics processing units.

The Gillespie τ-Leaping Method is an approximate algorithm that is faster than the exact Direct Method (DM) due to the progression of the simulation with larger time steps. However, the procedure to compute the time leap τ is quite expensive. In this paper, we explore the acceleration of the τ-Leapi...

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Bibliographic Details
Main Authors: Ivan Komarov, Roshan M D'Souza, Jose-Juan Tapia
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2012-01-01
Series:PLoS ONE
Online Access:http://europepmc.org/articles/PMC3371023?pdf=render