Accelerating the Gillespie τ-Leaping Method using graphics processing units.

by Ivan Komarov, Roshan M D'Souza, Jose-Juan Tapia
Published 2012-01-01

Automated visualization of rule-based models.

by John Arul Prakash Sekar, Jose-Juan Tapia, James R Faeder
Published 2017-11-01

Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories.

by Rory M Donovan, Jose-Juan Tapia, Devin P Sullivan, James R Faeder, Robert F Murphy, Markus Dittrich, Daniel M Zuckerman
Published 2016-02-01