A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

Abstract Background Most published genome sequences are drafts, and most are dominated by computational gene prediction. Draft genomes typically incorporate considerable sequence data that are not assigned to chromosomes, and predicted genes without quality confidence measures. The current Actinidia...

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Main Authors: Sarah M. Pilkington, Ross Crowhurst, Elena Hilario, Simona Nardozza, Lena Fraser, Yongyan Peng, Kularajathevan Gunaseelan, Robert Simpson, Jibran Tahir, Simon C. Deroles, Kerry Templeton, Zhiwei Luo, Marcus Davy, Canhong Cheng, Mark McNeilage, Davide Scaglione, Yifei Liu, Qiong Zhang, Paul Datson, Nihal De Silva, Susan E. Gardiner, Heather Bassett, David Chagné, John McCallum, Helge Dzierzon, Cecilia Deng, Yen-Yi Wang, Lorna Barron, Kelvina Manako, Judith Bowen, Toshi M. Foster, Zoe A. Erridge, Heather Tiffin, Chethi N. Waite, Kevin M. Davies, Ella P. Grierson, William A. Laing, Rebecca Kirk, Xiuyin Chen, Marion Wood, Mirco Montefiori, David A. Brummell, Kathy E. Schwinn, Andrew Catanach, Christina Fullerton, Dawei Li, Sathiyamoorthy Meiyalaghan, Niels Nieuwenhuizen, Nicola Read, Roneel Prakash, Don Hunter, Huaibi Zhang, Marian McKenzie, Mareike Knäbel, Alastair Harris, Andrew C. Allan, Andrew Gleave, Angela Chen, Bart J. Janssen, Blue Plunkett, Charles Ampomah-Dwamena, Charlotte Voogd, Davin Leif, Declan Lafferty, Edwige J. F. Souleyre, Erika Varkonyi-Gasic, Francesco Gambi, Jenny Hanley, Jia-Long Yao, Joey Cheung, Karine M. David, Ben Warren, Ken Marsh, Kimberley C. Snowden, Kui Lin-Wang, Lara Brian, Marcela Martinez-Sanchez, Mindy Wang, Nadeesha Ileperuma, Nikolai Macnee, Robert Campin, Peter McAtee, Revel S. M. Drummond, Richard V. Espley, Hilary S. Ireland, Rongmei Wu, Ross G. Atkinson, Sakuntala Karunairetnam, Sean Bulley, Shayhan Chunkath, Zac Hanley, Roy Storey, Amali H. Thrimawithana, Susan Thomson, Charles David, Raffaele Testolin, Hongwen Huang, Roger P. Hellens, Robert J. Schaffer
Format: Article
Language:English
Published: BMC 2018-04-01
Series:BMC Genomics
Subjects:
Manual annotation
Genome sequencing
Actinidia chinensis
Online Access:http://link.springer.com/article/10.1186/s12864-018-4656-3

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http://link.springer.com/article/10.1186/s12864-018-4656-3

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