Genomic selection for fruit quality traits in apple (Malus×domestica Borkh.).

by Satish Kumar, David Chagné, Marco C A M Bink, Richard K Volz, Claire Whitworth, Charmaine Carlisle
Published 2012-01-01

Indigenous Perspectives and Gene Editing in Aotearoa New Zealand

by Maui Hudson, Aroha Te Pareake Mead, David Chagné, Nick Roskruge, Sandy Morrison, Phillip L. Wilcox, Andrew C. Allan, Andrew C. Allan
Published 2019-04-01

Validation of SNP markers for fruit quality and disease resistance loci in apple (Malus × domestica Borkh.) using the OpenArray® platform

by David Chagné, Stijn Vanderzande, Chris Kirk, Natalie Profitt, Rosemary Weskett, Susan E. Gardiner, Cameron P. Peace, Richard K. Volz, Nahla V. Bassil
Published 2019-03-01

CRISPR-Cas9 enrichment and long read sequencing for fine mapping in plants

by Elena López-Girona, Marcus W. Davy, Nick W. Albert, Elena Hilario, Maia E. M. Smart, Chris Kirk, Susan J. Thomson, David Chagné
Published 2020-09-01

Peridermal fruit skin formation in Actinidia sp. (kiwifruit) is associated with genetic loci controlling russeting and cuticle formation

by Nikolai Macnee, Elena Hilario, Jibran Tahir, Alastair Currie, Ben Warren, Ria Rebstock, Ian C. Hallett, David Chagné, Robert J. Schaffer, Sean M. Bulley
Published 2021-07-01

Two Loci, RiAF3 and RiAF4, Contribute to the Annual-Fruiting Trait in Rubus

by Rubina Jibran, Jessica Spencer, Gina Fernandez, Amparo Monfort, Amparo Monfort, Mourad Mnejja, Mourad Mnejja, Helge Dzierzon, Jibran Tahir, Kevin Davies, David Chagné, Toshi M. Foster
Published 2019-10-01

Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh).

by Luca Bianco, Alessandro Cestaro, Daniel James Sargent, Elisa Banchi, Sophia Derdak, Mario Di Guardo, Silvio Salvi, Johannes Jansen, Roberto Viola, Ivo Gut, Francois Laurens, David Chagné, Riccardo Velasco, Eric van de Weg, Michela Troggio
Published 2014-01-01

QTL Mapping for Resistance to Cankers Induced by <i>Pseudomonas syringae</i> pv. <i>actinidiae</i> (Psa) in a Tetraploid <i>Actinidia chinensis</i> Kiwifruit Population

by Jibran Tahir, Cyril Brendolise, Stephen Hoyte, Marielle Lucas, Susan Thomson, Kirsten Hoeata, Catherine McKenzie, Andrew Wotton, Keith Funnell, Ed Morgan, Duncan Hedderley, David Chagné, Peter M. Bourke, John McCallum, Susan E. Gardiner, Luis Gea
Published 2020-11-01

Mapping of fire blight resistance in Malus ×robusta 5 flowers following artificial inoculation

by Andreas Peil, Christine Hübert, Annette Wensing, Mary Horner, Ofere Francis Emeriewen, Klaus Richter, Thomas Wöhner, David Chagné, Carolina Orellana-Torrejon, Munazza Saeed, Michela Troggio, Erika Stefani, Susan E. Gardiner, Magda-Viola Hanke, Henryk Flachowsky, Vincent G.M. Bus
Published 2019-12-01

Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data

by Rubina Jibran, Helge Dzierzon, Nahla Bassil, Jill M. Bushakra, Patrick P. Edger, Shawn Sullivan, Chad E. Finn, Michael Dossett, Kelly J. Vining, Robert VanBuren, Todd C. Mockler, Ivan Liachko, Kevin M. Davies, Toshi M. Foster, David Chagné
Published 2018-02-01

Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization

by Sara Montanari, Luca Bianco, Brian J. Allen, Pedro J. Martínez-García, Nahla V. Bassil, Joseph Postman, Mareike Knäbel, Biff Kitson, Cecilia H. Deng, David Chagné, Marc W. Crepeau, Charles H. Langley, Kate Evans, Amit Dhingra, Michela Troggio, David B. Neale
Published 2019-05-01

Identification of Pyrus single nucleotide polymorphisms (SNPs) and evaluation for genetic mapping in European pear and interspecific Pyrus hybrids.

by Sara Montanari, Munazza Saeed, Mareike Knäbel, YoonKyeong Kim, Michela Troggio, Mickael Malnoy, Riccardo Velasco, Paolo Fontana, KyungHo Won, Charles-Eric Durel, Laure Perchepied, Robert Schaffer, Claudia Wiedow, Vincent Bus, Lester Brewer, Susan E Gardiner, Ross N Crowhurst, David Chagné
Published 2013-01-01

Multiple quantitative trait loci contribute to resistance to bacterial canker incited by Pseudomonas syringae pv. actinidiae in kiwifruit (Actinidia chinensis)

by Jibran Tahir, Stephen Hoyte, Heather Bassett, Cyril Brendolise, Abhishek Chatterjee, Kerry Templeton, Cecilia Deng, Ross Crowhurst, Mirco Montefiori, Ed Morgan, Andrew Wotton, Keith Funnell, Claudia Wiedow, Mareike Knaebel, Duncan Hedderley, Joel Vanneste, John McCallum, Kirsten Hoeata, Amardeep Nath, David Chagné, Luis Gea, Susan E. Gardiner
Published 2019-09-01

Genome-wide SNP detection, validation, and development of an 8K SNP array for apple.

by David Chagné, Ross N Crowhurst, Michela Troggio, Mark W Davey, Barbara Gilmore, Cindy Lawley, Stijn Vanderzande, Roger P Hellens, Satish Kumar, Alessandro Cestaro, Riccardo Velasco, Dorrie Main, Jasper D Rees, Amy Iezzoni, Todd Mockler, Larry Wilhelm, Eric Van de Weg, Susan E Gardiner, Nahla Bassil, Cameron Peace
Published 2012-01-01

Apple whole genome sequences: recent advances and new prospects

by Cameron P. Peace, Luca Bianco, Michela Troggio, Eric van de Weg, Nicholas P. Howard, Amandine Cornille, Charles-Eric Durel, Sean Myles, Zoë Migicovsky, Robert J. Schaffer, Evelyne Costes, Gennaro Fazio, Hisayo Yamane, Steve van Nocker, Chris Gottschalk, Fabrizio Costa, David Chagné, Xinzhong Zhang, Andrea Patocchi, Susan E. Gardiner, Craig Hardner, Satish Kumar, Francois Laurens, Etienne Bucher, Dorrie Main, Sook Jung, Stijn Vanderzande
Published 2019-04-01

Diversification and independent domestication of Asian and European pears

by Jun Wu, Yingtao Wang, Jiabao Xu, Schuyler S. Korban, Zhangjun Fei, Shutian Tao, Ray Ming, Shuaishuai Tai, Awais M. Khan, Joseph D. Postman, Chao Gu, Hao Yin, Danman Zheng, Kaijie Qi, Yong Li, Runze Wang, Cecilia H. Deng, Satish Kumar, David Chagné, Xiaolong Li, Juyou Wu, Xiaosan Huang, Huping Zhang, Zhihua Xie, Xiao Li, Mingyue Zhang, Yanhong Li, Zhen Yue, Xiaodong Fang, Jiaming Li, Leiting Li, Cong Jin, Mengfan Qin, Jiaying Zhang, Xiao Wu, Yaqi Ke, Jian Wang, Huanmimg Yang, Shaoling Zhang
Published 2018-06-01

The draft genome sequence of European pear (Pyrus communis L. 'Bartlett').

by David Chagné, Ross N Crowhurst, Massimo Pindo, Amali Thrimawithana, Cecilia Deng, Hilary Ireland, Mark Fiers, Helge Dzierzon, Alessandro Cestaro, Paolo Fontana, Luca Bianco, Ashley Lu, Roy Storey, Mareike Knäbel, Munazza Saeed, Sara Montanari, Yoon Kyeong Kim, Daniela Nicolini, Simone Larger, Erika Stefani, Andrew C Allan, Judith Bowen, Isaac Harvey, Jason Johnston, Mickael Malnoy, Michela Troggio, Laure Perchepied, Greg Sawyer, Claudia Wiedow, Kyungho Won, Roberto Viola, Roger P Hellens, Lester Brewer, Vincent G M Bus, Robert J Schaffer, Susan E Gardiner, Riccardo Velasco
Published 2014-01-01

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

by Sarah M. Pilkington, Ross Crowhurst, Elena Hilario, Simona Nardozza, Lena Fraser, Yongyan Peng, Kularajathevan Gunaseelan, Robert Simpson, Jibran Tahir, Simon C. Deroles, Kerry Templeton, Zhiwei Luo, Marcus Davy, Canhong Cheng, Mark McNeilage, Davide Scaglione, Yifei Liu, Qiong Zhang, Paul Datson, Nihal De Silva, Susan E. Gardiner, Heather Bassett, David Chagné, John McCallum, Helge Dzierzon, Cecilia Deng, Yen-Yi Wang, Lorna Barron, Kelvina Manako, Judith Bowen, Toshi M. Foster, Zoe A. Erridge, Heather Tiffin, Chethi N. Waite, Kevin M. Davies, Ella P. Grierson, William A. Laing, Rebecca Kirk, Xiuyin Chen, Marion Wood, Mirco Montefiori, David A. Brummell, Kathy E. Schwinn, Andrew Catanach, Christina Fullerton, Dawei Li, Sathiyamoorthy Meiyalaghan, Niels Nieuwenhuizen, Nicola Read, Roneel Prakash, Don Hunter, Huaibi Zhang, Marian McKenzie, Mareike Knäbel, Alastair Harris, Andrew C. Allan, Andrew Gleave, Angela Chen, Bart J. Janssen, Blue Plunkett, Charles Ampomah-Dwamena, Charlotte Voogd, Davin Leif, Declan Lafferty, Edwige J. F. Souleyre, Erika Varkonyi-Gasic, Francesco Gambi, Jenny Hanley, Jia-Long Yao, Joey Cheung, Karine M. David, Ben Warren, Ken Marsh, Kimberley C. Snowden, Kui Lin-Wang, Lara Brian, Marcela Martinez-Sanchez, Mindy Wang, Nadeesha Ileperuma, Nikolai Macnee, Robert Campin, Peter McAtee, Revel S. M. Drummond, Richard V. Espley, Hilary S. Ireland, Rongmei Wu, Ross G. Atkinson, Sakuntala Karunairetnam, Sean Bulley, Shayhan Chunkath, Zac Hanley, Roy Storey, Amali H. Thrimawithana, Susan Thomson, Charles David, Raffaele Testolin, Hongwen Huang, Roger P. Hellens, Robert J. Schaffer
Published 2018-04-01