Predicting chemoinsensitivity in breast cancer with ’omics/digital pathology data fusion

by Richard S. Savage, Yinyin Yuan
Published 2016-01-01

Patient-specific data fusion defines prognostic cancer subtypes.

by Yinyin Yuan, Richard S Savage, Florian Markowetz
Published 2011-10-01

Directed partial correlation: inferring large-scale gene regulatory network through induced topology disruptions.

by Yinyin Yuan, Chang-Tsun Li, Oliver Windram
Published 2011-01-01

SuperHistopath: A Deep Learning Pipeline for Mapping Tumor Heterogeneity on Low-Resolution Whole-Slide Digital Histopathology Images

by Konstantinos Zormpas-Petridis, Rosa Noguera, Rosa Noguera, Daniela Kolarevic Ivankovic, Ioannis Roxanis, Yann Jamin, Yinyin Yuan
Published 2021-01-01

Analysis of tumour ecological balance reveals resource-dependent adaptive strategies of ovarian cancer

by Sidra Nawaz, Nicholas A. Trahearn, Andreas Heindl, Susana Banerjee, Carlo C. Maley, Andrea Sottoriva, Yinyin Yuan
Published 2019-10-01

Microenvironmental Heterogeneity Parallels Breast Cancer Progression: A Histology-Genomic Integration Analysis.

by Rachael Natrajan, Heba Sailem, Faraz K Mardakheh, Mar Arias Garcia, Christopher J Tape, Mitch Dowsett, Chris Bakal, Yinyin Yuan
Published 2016-02-01

Superpixel-Based Conditional Random Fields (SuperCRF): Incorporating Global and Local Context for Enhanced Deep Learning in Melanoma Histopathology

by Konstantinos Zormpas-Petridis, Konstantinos Zormpas-Petridis, Henrik Failmezger, Shan E Ahmed Raza, Ioannis Roxanis, Ioannis Roxanis, Yann Jamin, Yann Jamin, Yinyin Yuan
Published 2019-10-01

Microenvironmental niche divergence shapes BRCA1-dysregulated ovarian cancer morphological plasticity

by Andreas Heindl, Adnan Mujahid Khan, Daniel Nava Rodrigues, Katherine Eason, Anguraj Sadanandam, Cecilia Orbegoso, Marco Punta, Andrea Sottoriva, Stefano Lise, Susana Banerjee, Yinyin Yuan
Published 2018-09-01

Unmasking the immune microecology of ductal carcinoma in situ with deep learning

by Priya Lakshmi Narayanan, Shan E. Ahmed Raza, Allison H. Hall, Jeffrey R. Marks, Lorraine King, Robert B. West, Lucia Hernandez, Naomi Guppy, Mitch Dowsett, Barry Gusterson, Carlo Maley, E. Shelley Hwang, Yinyin Yuan
Published 2021-03-01

Analysis of heterogeneity in T2-weighted MR images can differentiate pseudoprogression from progression in glioblastoma.

by Thomas C Booth, Timothy J Larkin, Yinyin Yuan, Mikko I Kettunen, Sarah N Dawson, Daniel Scoffings, Holly C Canuto, Sarah L Vowler, Heide Kirschenlohr, Michael P Hobson, Florian Markowetz, Sarah Jefferies, Kevin M Brindle
Published 2017-01-01

Non-Invasive Prostate Cancer Characterization with Diffusion-Weighted MRI: Insight from In silico Studies of a Transgenic Mouse Model

by Deborah K. Hill, Deborah K. Hill, Andreas Heindl, Konstantinos Zormpas-Petridis, David J. Collins, Leslie R. Euceda, Daniel N. Rodrigues, Siver A. Moestue, Siver A. Moestue, Siver A. Moestue, Yann Jamin, Dow-Mu Koh, Yinyin Yuan, Tone F. Bathen, Martin O. Leach, Matthew D. Blackledge
Published 2017-12-01