Immunoglobulin light chain (IgL) genes in zebrafish: Genomic configurations and inversional rearrangements between (V[subscript L]-J[subscript L-C[subscript L) gene clusters

by Zimmerman, Anastasia M., Yeo, Gene, Howe, Kerstin, Maddox, Benjamin J., Steiner, Lisa A.
Published 2012

Sequence, Structure, and Context Preferences of Human RNA Binding Proteins

by Freese, Peter, Alexis, Maria S., Van Nostrand, Eric L., Pratt, Gabriel A., Yeo, Gene W., Graveley, Brenton R., Dominguez, Daniel, Su, Amanda J, Hochman, Myles, Palden, Tsultrim, Bazile, Cassandra, Lambert, Nicole, Burge, Christopher B
Published 2018

Enhanced CLIP Uncovers IMP Protein-RNA Targets in Human Pluripotent Stem Cells Important for Cell Adhesion and Survival

by Conway, Anne E, Van Nostrand, Eric L, Pratt, Gabriel A, Aigner, Stefan, Wilbert, Melissa L, Sundararaman, Balaji, Lambert, Nicole J, Sathe, Shashank, Liang, Tiffany Y, Essex, Anthony, Landais, Severine, Burge, Christopher B, Jones, D. Leanne, Yeo, Gene W, Freese, Peter Dale, Lambert, Nicole, Burge, Christopher B
Published 2016

Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA

by Yang, Ei-Wen, Bahn, Jae Hoon, Yun-Hua Hsiao, Esther, Tan, Boon Xin, Sun, Yiwei, Fu, Ting, Zhou, Bo, Van Nostrand, Eric L., Pratt, Gabriel A., Freese, Peter Dale, Wei, Xintao, Quinones-Valdez, Giovanni, Urban, Alexander E., Graveley, Brenton R., Burge, Christopher B, Yeo, Gene W., Xiao, Xinshu
Published 2020

Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription

by Xiao, Rui, Chen, Jia-Yu, Liang, Zhengyu, Luo, Daji, Chen, Geng, Lu, Zhi John, Chen, Yang, Zhou, Bing, Li, Hairi, Du, Xian, Yang, Yang, San, Mingkui, Wei, Xintao, Liu, Wen, Lécuyer, Eric, Graveley, Brenton R., Yeo, Gene W., Burge, Christopher B, Zhang, Michael Q., Zhou, Yu, Fu, Xiang-Dong
Published 2020

Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses

by Kapeli, Katannya, Pratt, Gabriel A., Vu, Anthony Q., Hutt, Kasey R., Martinez, Fernando J., Sundararaman, Balaji, Batra, Ranjan, Huelga, Stephanie C., Chun, Seung J., Liang, Tiffany Y., Chang, Jeremy, Donohue, John P., Shiue, Lily, Zhang, Jiayu, Zhu, Haining, Cambi, Franca, Kasarskis, Edward, Hoon, Shawn, Ares Jr., Manuel, Ravits, John, Rigo, Frank, Yeo, Gene W., Freese, Peter Dale, Lambert, Nicole, Burge, Christopher B
Published 2017

Expanded encyclopaedias of DNA elements in the human and mouse genomes

by Moore, Jill E., Purcaro, Michael J., Pratt, Henry E., Epstein, Charles B., Shoresh, Noam, Adrian, Jessika, Kawli, Trupti, Davis, Carrie A., Dobin, Alexander, Kaul, Rajinder, Halow, Jessica, Van Nostrand, Eric L., Freese, Peter Dale, Gorkin, David U., Shen, Yin, He, Yupeng, Mackiewicz, Mark, Pauli-Behn, Florencia, Williams, Brian A., Mortazavi, Ali, Keller, Cheryl A., Zhang, Xiao-Ou, Elhajjajy, Shaimae I., Huey, Jack, Dickel, Diane E., Snetkova, Valentina, Wei, Xintao, Wang, Xiaofeng, Rivera-Mulia, Juan Carlos, Rozowsky, Joel, Zhang, Jing, Chhetri, Surya B., Zhang, Jialing, Victorsen, Alec, White, Kevin P., Visel, Axel, Yeo, Gene W., Burge, Christopher B, Lécuyer, Eric, Gilbert, David M., Dekker, Job, Rinn, John, Mendenhall, Eric M., Ecker, Joseph R., Kellis, Manolis, Klein, Robert J., Noble, William S., Kundaje, Anshul, Guigó, Roderic, Farnham, Peggy J., Cherry, J. Michael, Myers, Richard M., Ren, Bing, Graveley, Brenton R., Gerstein, Mark B., Pennacchio, Len A., Snyder, Michael P., Bernstein, Bradley E., Wold, Barbara, Hardison, Ross C., Gingeras, Thomas R., Stamatoyannopoulos, John A., Weng, Zhiping
Published 2021