Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies

by Tom O. Delmont, A. Murat Eren
Published 2016-03-01

Linking pangenomes and metagenomes: the Prochlorococcus metapangenome

by Tom O. Delmont, A. Murat Eren
Published 2018-01-01

Functional Basis of Microorganism Classification.

by Chengsheng Zhu, Tom O Delmont, Timothy M Vogel, Yana Bromberg
Published 2015-08-01

Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica

by Tom O Delmont, A Murat Eren, Joseph Henry Vineis, Anton F Post
Published 2015-10-01

Life on human surfaces: skin metagenomics.

by Alban Mathieu, Tom O Delmont, Timothy M Vogel, Patrick Robe, Renaud Nalin, Pascal Simonet
Published 2013-01-01

BACTERIAL COMMUNITY STRUCTURES IN THE AMUNDSEN SEA POLYNYA ARE SHAPED BY PHAEOCYSTIS ANTARCTICA BLOOMS

by Tom O Delmont, Katherine M Hammar, Hugh W Ducklow, Patricia L Yager, Anton F Post
Published 2014-12-01

Discovery of Viral Myosin Genes With Complex Evolutionary History Within Plankton

by Soichiro Kijima, Tom O. Delmont, Urara Miyazaki, Urara Miyazaki, Morgan Gaia, Hisashi Endo, Hiroyuki Ogata
Published 2021-06-01

DESMAN: a new tool for de novo extraction of strains from metagenomes

by Christopher Quince, Tom O. Delmont, Sébastien Raguideau, Johannes Alneberg, Aaron E. Darling, Gavin Collins, A. Murat Eren
Published 2017-09-01

Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade

by Tom O Delmont, Evan Kiefl, Ozsel Kilinc, Ozcan C Esen, Ismail Uysal, Michael S Rappé, Steven Giovannoni, A Murat Eren
Published 2019-09-01

Anvi’o: an advanced analysis and visualization platform for ‘omics data

by A. Murat Eren, Özcan C. Esen, Christopher Quince, Joseph H. Vineis, Hilary G. Morrison, Mitchell L. Sogin, Tom O. Delmont
Published 2015-10-01

Reconstructing Rare Soil Microbial Genomes using in situ Enrichments and Metagenomics

by Tom O Delmont, Tom O Delmont, A Murat Eren, Lorrie eMaccario, Emmanuel ePrestat, Özcan eEsen, Eric ePelletier, Eric ePelletier, Eric ePelletier, Denis eLePaslier, Denis eLePaslier, Denis eLePaslier, Pascal eSIMONET, Timothy eVogel
Published 2015-04-01

Genomic variation in microbial populations inhabiting the marine subseafloor at deep-sea hydrothermal vents

by Rika E. Anderson, Julie Reveillaud, Emily Reddington, Tom O. Delmont, A. Murat Eren, Jill M. McDermott, Jeff S. Seewald, Julie A. Huber
Published 2017-10-01

Peripartum Antibiotics Promote Gut Dysbiosis, Loss of Immune Tolerance, and Inflammatory Bowel Disease in Genetically Prone Offspring

by Jun Miyoshi, Alexandria M. Bobe, Sawako Miyoshi, Yong Huang, Nathaniel Hubert, Tom O. Delmont, A. Murat Eren, Vanessa Leone, Eugene B. Chang
Published 2017-07-01

VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses

by Jiarong Guo, Ben Bolduc, Ahmed A. Zayed, Arvind Varsani, Guillermo Dominguez-Huerta, Tom O. Delmont, Akbar Adjie Pratama, M. Consuelo Gazitúa, Dean Vik, Matthew B. Sullivan, Simon Roux
Published 2021-02-01

Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics

by Sonny T. M. Lee, Stacy A. Kahn, Tom O. Delmont, Alon Shaiber, Özcan C. Esen, Nathaniel A. Hubert, Hilary G. Morrison, Dionysios A. Antonopoulos, David T. Rubin, A. Murat Eren
Published 2017-05-01

Patient-Specific Bacteroides Genome Variants in Pouchitis

by Joseph H. Vineis, Daina L. Ringus, Hilary G. Morrison, Tom O. Delmont, Sushila Dalal, Laura H. Raffals, Dionysios A. Antonopoulos, David T. Rubin, A. Murat Eren, Eugene B. Chang, Mitchell L. Sogin
Published 2016-11-01

Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

by Jacob A. Rasmussen, Kasper R. Villumsen, David A. Duchêne, Lara C. Puetz, Tom O. Delmont, Harald Sveier, Louise von Gersdorff Jørgensen, Kim Præbel, Michael D. Martin, Anders M. Bojesen, M. Thomas P. Gilbert, Karsten Kristiansen, Morten T. Limborg
Published 2021-05-01

Eukaryotic virus composition can predict the efficiency of carbon export in the global ocean

by Hiroto Kaneko, Romain Blanc-Mathieu, Hisashi Endo, Samuel Chaffron, Tom O. Delmont, Morgan Gaia, Nicolas Henry, Rodrigo Hernández-Velázquez, Canh Hao Nguyen, Hiroshi Mamitsuka, Patrick Forterre, Olivier Jaillon, Colomban de Vargas, Matthew B. Sullivan, Curtis A. Suttle, Lionel Guidi, Hiroyuki Ogata
Published 2021-01-01

New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes

by Marie E. Kroeger, Tom O. Delmont, A. M. Eren, A. M. Eren, Kyle M. Meyer, Jiarong Guo, Kiran Khan, Jorge L. M. Rodrigues, Brendan J. M. Bohannan, Susannah G. Tringe, Clovis D. Borges, James M. Tiedje, Siu M. Tsai, Klaus Nüsslein
Published 2018-07-01

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

by Alon Shaiber, Amy D. Willis, Tom O. Delmont, Simon Roux, Lin-Xing Chen, Abigail C. Schmid, Mahmoud Yousef, Andrea R. Watson, Karen Lolans, Özcan C. Esen, Sonny T. M. Lee, Nora Downey, Hilary G. Morrison, Floyd E. Dewhirst, Jessica L. Mark Welch, A. Murat Eren
Published 2020-12-01