Optimized Threshold Inference for Partitioning of Clones From High-Throughput B Cell Repertoire Sequencing Data

by Nima Nouri, Steven H. Kleinstein, Steven H. Kleinstein
Published 2018-07-01

Getting started in computational immunology.

by Steven H Kleinstein
Published 2008-08-01

Somatic hypermutation analysis for improved identification of B cell clonal families from next-generation sequencing data.

by Nima Nouri, Steven H Kleinstein
Published 2020-06-01

Local Clonal Diversification and Dissemination of B Lymphocytes in the Human Bronchial Mucosa

by Line Ohm-Laursen, Line Ohm-Laursen, Hailong Meng, Jessica Chen, Julian Q. Zhou, Chris J. Corrigan, Chris J. Corrigan, Hannah J. Gould, Hannah J. Gould, Steven H. Kleinstein, Steven H. Kleinstein, Steven H. Kleinstein
Published 2018-09-01

Identification of Subject-Specific Immunoglobulin Alleles From Expressed Repertoire Sequencing Data

by Daniel Gadala-Maria, Moriah Gidoni, Susanna Marquez, Jason A. Vander Heiden, Justin T. Kos, Corey T. Watson, Kevin C. O'Connor, Kevin C. O'Connor, Gur Yaari, Steven H. Kleinstein, Steven H. Kleinstein, Steven H. Kleinstein
Published 2019-02-01

Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE).

by Hailong Meng, Gur Yaari, Christopher R Bolen, Stefan Avey, Steven H Kleinstein
Published 2019-04-01

LinkedImm: a linked data graph database for integrating immunological data

by Syed Ahmad Chan Bukhari, Shrikant Pawar, Jeff Mandell, Steven H. Kleinstein, Kei-Hoi Cheung
Published 2021-08-01

Gene expression analysis of forskolin treated basilar papillae identifies microRNA181a as a mediator of proliferation.

by Corey S Frucht, Mohamed Uduman, Jamie L Duke, Steven H Kleinstein, Joseph Santos-Sacchi, Dhasakumar S Navaratnam
Published 2010-07-01

Salmonella Typhimurium type III secretion effectors stimulate innate immune responses in cultured epithelial cells.

by Vincent M Bruno, Sebastian Hannemann, María Lara-Tejero, Richard A Flavell, Steven H Kleinstein, Jorge E Galán
Published 2009-08-01

The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories

by Syed Ahmad Chan Bukhari, Martin J. O’Connor, Marcos Martínez-Romero, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Florian Rubelt, Kei-Hoi Cheung, Kei-Hoi Cheung, Kei-Hoi Cheung, Steven H. Kleinstein, Steven H. Kleinstein
Published 2018-08-01

Affinity Maturation Is Impaired by Natural Killer Cell Suppression of Germinal Centers

by Carolyn E. Rydyznski, Stacey A. Cranert, Julian Q. Zhou, Heping Xu, Steven H. Kleinstein, Harinder Singh, Stephen N. Waggoner
Published 2018-09-01

AIRR Community Standardized Representations for Annotated Immune Repertoires

by Jason Anthony Vander Heiden, Susanna Marquez, Nishanth Marthandan, Syed Ahmad Chan Bukhari, Christian E. Busse, Brian Corrie, Uri Hershberg, Uri Hershberg, Uri Hershberg, Steven H. Kleinstein, Steven H. Kleinstein, Frederick A. Matsen IV, Duncan K. Ralph, Aaron M. Rosenfeld, Chaim A. Schramm, The AIRR Community, Scott Christley, Uri Laserson
Published 2018-09-01

Reporting and connecting cell type names and gating definitions through ontologies

by James A. Overton, Randi Vita, Patrick Dunn, Julie G. Burel, Syed Ahmad Chan Bukhari, Kei-Hoi Cheung, Steven H. Kleinstein, Alexander D. Diehl, Bjoern Peters
Published 2019-04-01

CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata

by Syed Ahmad Chan Bukhari, Marcos Martínez-Romero, Martin J. O’ Connor, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Kei-Hoi Cheung, Steven H. Kleinstein
Published 2018-07-01

Long-lived antigen-induced IgM plasma cells demonstrate somatic mutations and contribute to long-term protection

by Caitlin Bohannon, Ryan Powers, Lakshmipriyadarshini Satyabhama, Ang Cui, Christopher Tipton, Miri Michaeli, Ioanna Skountzou, Robert S. Mittler, Steven H. Kleinstein, Ramit Mehr, Frances Eun-Yun Lee, Ignacio Sanz, Joshy Jacob
Published 2016-06-01

Correction: Corrigendum: Long-lived antigen-induced IgM plasma cells demonstrate somatic mutations and contribute to long-term protection

by Caitlin Bohannon, Ryan Powers, Lakshmipriyadarshini Satyabhama, Ang Cui, Christopher Tipton, Miri Michaeli, Ioanna Skountzou, Robert S. Mittler, Steven H. Kleinstein, Ramit Mehr, Frances Eun-Hyung Lee, Ignacio Sanz, Joshy Jacob
Published 2016-08-01

Comparing Host Module Activation Patterns and Temporal Dynamics in Infection by Influenza H1N1 Viruses

by Irina Nudelman, Irina Nudelman, Daniil Kudrin, German Nudelman, Raamesh Deshpande, Boris M. Hartmann, Boris M. Hartmann, Steven H. Kleinstein, Chad L. Myers, Chad L. Myers, Stuart C. Sealfon, Stuart C. Sealfon, Elena Zaslavsky, Elena Zaslavsky
Published 2021-07-01

Individual heritable differences result in unique cell lymphocyte receptor repertoires of naïve and antigen-experienced cells

by Florian Rubelt, Christopher R. Bolen, Helen M. McGuire, Jason A. Vander Heiden, Daniel Gadala-Maria, Mikhail Levin, Ghia M. Euskirchen, Murad R. Mamedov, Gary E. Swan, Cornelia L. Dekker, Lindsay G. Cowell, Steven H. Kleinstein, Mark M. Davis
Published 2016-03-01

Single cell immune profiling of dengue virus patients reveals intact immune responses to Zika virus with enrichment of innate immune signatures.

by Yujiao Zhao, Matthew Amodio, Brent Vander Wyk, Bram Gerritsen, Mahesh M Kumar, David van Dijk, Kevin Moon, Xiaomei Wang, Anna Malawista, Monique M Richards, Megan E Cahill, Anita Desai, Jayasree Sivadasan, Manjunatha M Venkataswamy, Vasanthapuram Ravi, Erol Fikrig, Priti Kumar, Steven H Kleinstein, Smita Krishnaswamy, Ruth R Montgomery
Published 2020-03-01

Spatiotemporal segregation of human marginal zone and memory B cell populations in lymphoid tissue

by Yuan Zhao, Mohamed Uduman, Jacqueline H. Y. Siu, Thomas J. Tull, Jeremy D. Sanderson, Yu-Chang Bryan Wu, Julian Q. Zhou, Nedyalko Petrov, Richard Ellis, Katrina Todd, Konstantia-Maria Chavele, William Guesdon, Anna Vossenkamper, Wayel Jassem, David P. D’Cruz, David J. Fear, Susan John, Dagmar Scheel-Toellner, Claire Hopkins, Estefania Moreno, Natalie L. Woodman, Francesca Ciccarelli, Susanne Heck, Steven H. Kleinstein, Mats Bemark, Jo Spencer
Published 2018-09-01